Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_019769.1 Length=38964 Score E Sequences producing significant alignments: (Bits) Value seq2 407 4e-109 >seq2 Length=62769430 Score = 407 bits (450), Expect = 4e-109 Identities = 233/238 (98%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 27170 ATCACCCAAACGTCTCTTCAGGCCACTGACTAGCGATAACTTTCCCCACAACGGAACAAC 27229 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927458 ATCAGCCAAACGTCTCTTCAGGCCACTGACTAGCGATAACTTTCCCCACAACGGAACAAC 60927517 Query 27230 TCTCATTGCATGGGATCATTGGGTATTGTGGGTTTAGTGGCTGTAGAAACACCTGACCGC 27289 ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| Sbjct 60927518 TCTCATTGCATGGGATCATTGGGTACTGTGGGTTTAGTGGTTGTAAAAACACCTGACCGC 60927577 Query 27290 TATCCCTGATCAGTTTCTTGAAGGTAAATTCATCACCCCCAAGTCTGGCTATGCAGAAAT 27349 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 60927578 TATCCCTGATCAGTTTCTTGAAGGTAAACTCATCACCCCCAAGTCTGGCTATGCAGAAAT 60927637 Query 27350 CACCTGGCTCAACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCT 27407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60927638 CACCTGGCTCAACAGCCTGCTCAGGGTCAACGAGAATTAACATTCCGTCAGGAAAGCT 60927695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124561670519608