Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq9 93.3 4e-14 seq2 84.2 2e-11 >seq6 Length=51074515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| ||||| || || ||||| ||| |||| || ||| Sbjct 42745202 ATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTCC 42745261 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || || ||||| || || | || || ||| Sbjct 42745262 GACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGCATCCCACCTGACCAA 42745321 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | ||||| || |||||||||||||||||| | || |||| |||||||| Sbjct 42745322 CAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTATAAT 42745381 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||| || || ||| | || || || | || |||||||| Sbjct 42745382 ATCCAAAAGGAATCCACCCTTCACCTTGTTTTGAGGCTTCGTGGAGGGAT 42745431 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || ||||| || ||| || ||| || Sbjct 42745430 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 42745489 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||| || || || || ||| | || ||||| Sbjct 42745490 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 42745549 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || || |||||||| |||||||||||||||||| | ||| |||| ||||||||| Sbjct 42745550 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 42745609 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||| ||||| || ||| Sbjct 42745610 ATTCAGAAAGAGTCTACCCTTCAC 42745633 >seq9 Length=70713020 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| | || || || ||||| ||| ||| |||| ||| Sbjct 66888647 ATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 66888588 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || ||||| || ||| ||||| || || | || ||| ||| Sbjct 66888587 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAA 66888528 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || |||||| | |||||| || | || ||||| ||| Sbjct 66888527 CAGAGGCTTATCTTTGCAGGTAAACAACTTGAAGATGGCCGGACCCTCGCTGATTACAAC 66888468 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| ||||| || ||| Sbjct 66888467 ATCCAGAAAGAGTCTACGCTCCAC 66888444 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || ||||| || || ||||| || || || |||| ||| Sbjct 65274094 ATGCAGATTTTCGTTAAGACATTGACTGGGAAAACAATCACATTGGAGGTGGAAAGTTCG 65274153 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||| || ||||| || || | ||| |||||| Sbjct 65274154 GATACAATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAAGGTATCCCCCCAGATCAG 65274213 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || || |||||||| ||||| |||||||| ||| | ||| | || ||||||||| Sbjct 65274214 CAAAGGCTCATCTTTGCTGGCAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAAC 65274273 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||| || || || ||| Sbjct 65274274 ATTCAGAAAGAGTCCACCCTTCAC 65274297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || ||||| | || || || || || ||| ||| |||| ||| Sbjct 66882493 ATGCAGATATTCGTGAAAACTCTTACTGGCAAGACTATCACCCTCGAGGTGGAAAGTTCC 66882434 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||| || || | || ||| ||| Sbjct 66882433 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 66882374 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || ||||| | |||||| |||| | || ||||| ||| Sbjct 66882373 CAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAAC 66882314 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || ||||| ||||| || ||| Sbjct 66882313 ATCCAGAAAGAGTCTACCCTCCAC 66882290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || ||||| ||||| ||| || ||| || Sbjct 66888875 ATGCAAATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGCTCC 66888816 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| |||||||| || | || ||| ||| Sbjct 66888815 GATACTATCGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGGATTCCTCCAGACCAA 66888756 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || ||||||||||| || |||||| | || ||| |||| | ||||| || ||| Sbjct 66888755 CAAAGGCTTATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTGCCGACTACAAC 66888696 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || ||||| || || || || ||| Sbjct 66888695 ATCCAAAAGGAGTCCACCCTCCAC 66888672 >seq2 Length=62769430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || || |||||||| || || |||| Sbjct 10549849 ATGCAAATATTTGTGAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGTTCA 10549908 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || ||| ||||| ||||| | ||| ||| ||| Sbjct 10549909 GATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 10549968 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || ||| | |||||| ||| | || ||||| ||| Sbjct 10549969 CAGAGGTTGATCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAAC 10550028 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| ||||| || || || |||| Sbjct 10550029 ATCCAAAAGGAATCCACCCTCCATTTGGT 10550057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425399439101886