Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 111 8e-20 >seq2 Length=62769430 Score = 111 bits (122), Expect = 8e-20 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||||||||| ||||| |||||||| || |||| ||||| |||||||| || || Sbjct 29135087 TACCTTTTCTTTTCCCTCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCA 29135028 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||| || | |||| | || || ||||| | | |||| | ||||| | || Sbjct 29135027 GCATTGGGACAATTCCATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTC 29134968 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC-- 26241 ||||| |||| || || ||| ||||| ||||| |||| ||| | ||||| || Sbjct 29134967 GAATATTGTGAACAGAAACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCT 29134908 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||| || || | ||||||| || |||||| ||||||| Sbjct 29134907 TCAAA--GTTTCATATATTCCTTCAATACTATCATCTTTCAT 29134868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253036811221550