Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 seq3 96.9 4e-15 seq9 84.2 3e-11 >seq2 Length=62769430 Score = 100 bits (110), Expect = 3e-16 Identities = 303/461 (66%), Gaps = 8/461 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAG-AGATTGTGGATTTTCTCA 175249 |||||||| || |||| | || |||| | |||| | | || ||||||| || | | Sbjct 1668424 TGATGTTGCTGGAGTTGATGAAGC-AAAGCAGGACTTCATGGAGGTTGTGGAGTTCTTAA 1668366 Query 175250 AGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCCCCGAGGCGCCCTTCTCGCG 175308 || | || || |||| || | ||| | | | | ||||| ||| | |||||| Sbjct 1668365 AGAAGCCAGAAAGAT-TTACCGCAGTCGGGGCTCGTATCCCTAAAGGTGTTCTTCTCATT 1668307 Query 175309 GGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC 175368 || || || || |||||||| || || || || || || |||||| | ||| Sbjct 1668306 GGCCCTCCTGGAACCGGAAAGACTCTTCTTGCTAAGGCAATTGCCGGTGAAGCTGGTGTG 1668247 Query 175369 CCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 |||||| || || | || | | | ||||| || |||||||||||||| ||||| Sbjct 1668246 CCATTCTTCTCCATT--TCCGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTT 1668189 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTG 175486 | ||||| ||||| || | | ||| || ||| || ||||||||||| | | Sbjct 1668188 CTCGAGTTCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCCCCCTGTATTGTCTTTGTGG 1668129 Query 175487 ATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGA 175546 |||| |||||||| || || ||| | | ||||| | || ||||| |||| Sbjct 1668128 ATGAAATTGATGCCGTTGGACGACAAAGAGGAACTGGTATTGGTGGAGGGAATGATGAGA 1668069 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 |||| ||||| |||| || || | ||||| |||||||| || || | | || || | Sbjct 1668068 GAGAGCAAACTCTTAACCAGCTTTTGACCGAAATGGATGGTTTCGAGGGTAACACCGGTA 1668009 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | | || ||||| || ||||| | | || || |||||| Sbjct 1668008 TCATCGTAATTGCAGCAACTAACAGAGCTGACATTCTTGAT 1667968 Score = 91.5 bits (100), Expect = 2e-13 Identities = 244/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| |||||||| || | || |||| | || || ||| | || || || Sbjct 16911478 CCTGGTACTGGAAAGACTCTATTGGCGAGAGCAGTAGCAGGAGAAGCCGGGGTTCCGTTT 16911419 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | ||||||||| |||| ||||| || ||||| || || Sbjct 16911418 TTCTCATGCGCTGCTTCTGAGTTTGTGGAGTTGTTCGTTGGAGTAGGTGCATCCAGAGTA 16911359 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | || | || || | ||| ||| ||| || || || |||||||||||||| Sbjct 16911358 AGGGACTTATTCGATAAGGCC----AAATCCAAGGCTCCTTGCATCGTCTTCATTGATGA 16911303 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||||| || || | || | | |||||| | || |||||| |||||||| Sbjct 16911302 GATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGAGGAGGAAATGATGAGAGAGA 16911243 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG-AGACTGGCATTG 175609 || ||||| ||||| | | || ||||||||||| ||| || | | |||| | Sbjct 16911242 GCAGACAATCAATCAGTTGTTGACTGAGATGGATGGATTT-TCAGGGAATTCTGGTGTCA 16911184 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | ||| | || || || || | |||| | ||||||| ||| | | || |||||| Sbjct 16911183 TTGTTTTGGCAGCAACCAACAGACCGGATGTTCTTGATGCCGCTTTGTTGCGGCCGGGTA 16911124 Query 175670 GTTTTGATCG 175679 | ||||| || Sbjct 16911123 GGTTTGACCG 16911114 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 || |||| ||| | | ||||||||| |||||||||| |||| | ||||| | | Sbjct 29134513 CGTGACTTTGACTACGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAA 29134572 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | || |||| || ||| ||||||| ||| |||| || | || || Sbjct 29134573 GTTCAAGGGAAGGTT-ATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAAT 29134631 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 || ||| ||||||||||||| | | || || ||| |||||| ||| | ||| Sbjct 29134632 TCATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 29134691 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || || || ||||||||||| || ||||| || || Sbjct 29134692 CACTCATGCTTCTCCCACTCTTTTCAATGCTGGGACTCCAAGGCCTCA 29134739 >seq3 Length=45765648 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||||| ||| | || ||| |||||| ||||||||||||||| | ||| |||| || Sbjct 6820494 CGGGACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTGAAA 6820435 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | || |||| || || ||||||| ||| |||| ||| | || | Sbjct 6820434 GT-TCAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAA 6820377 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | || | | ||||||||||||| | | || || ||| |||||| ||| | || Sbjct 6820376 TTCATAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGT 6820317 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | | ||| || | || || || ||||||||||| || ||||| || || Sbjct 6820316 TTACTCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCA 6820268 >seq9 Length=70713020 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/202 (70%), Gaps = 14/202 (7%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||| |||| ||||| || || || ||||| | ||| | || |||| || Sbjct 14511192 TTTGTGGAGTTGTTCGTTGGAGTAGGCGCGTCGAGGGTAAGGGATTTGTTCGAAAAGGC- 14511134 Query 175456 CGCGAAAATCAA-----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGC 175510 |||||| | || || ||||| |||||||||||||| ||||| || || | | Sbjct 14511133 ----AAAATCCAAAGCGCCTTGCATTGTATTCATTGATGAGATCGATGCTGTTGGGAGAC 14511078 Query 175511 AACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACT 175568 | | | ||||| | | | | || |||||| || ||||| || ||||| ||||| | Sbjct 14511077 AGAGAGGAGCTGGGCTTGGAGG--AGGAAATGATGAAAGAGAGCAGACAATCAATCAGTT 14511020 Query 175569 ACTCACCGAGATGGATGGCTTT 175590 || || ||||||||||| ||| Sbjct 14511019 GCTGACTGAGATGGATGGATTT 14510998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596561889337920