Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1034 486 6e-133 seq2 372 9e-99 seq1 306 1e-78 seq4 212 2e-50 seq3 156 1e-33 seq12 134 4e-27 seq6 109 2e-19 seq5 98.7 3e-16 seq11 80.6 8e-11 >seq1034 Length=160161 Score = 486 bits (538), Expect = 6e-133 Identities = 702/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 463 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 522 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 523 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 582 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 |||||||| || ||||| |||||||| || ||||| |||| ||||| | || || | | Sbjct 583 TGGTTAAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGAAC 642 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | |||||||| | |||||| || || ||| Sbjct 643 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 702 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 703 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 762 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 763 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 822 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 823 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 882 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || || || ||||| || || || ||||| || |||||||| Sbjct 883 CCAGCTACGCCTAACATGTGAAACGGATGCATAAGGATGTTGTGTTCAGCCTGGAATACA 942 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| ||||| |||||||| || || ||||| |||||| |||||| ||||| Sbjct 943 ATCATGAAGTTGAAAGTTCCAGAGATTCCTAGGGGCATACCATCAGAAAAACTTCCTTGA 1002 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | ||||| | ||||| || ||| ||| || | | || |||| |||||||||| Sbjct 1003 CCAATTGGATAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1062 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || || Sbjct 1063 GCGATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1122 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| || | ||| | | ||| || ||||||||||||| ||| Sbjct 1123 GCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAAGGACCGCCATTGTATAACCAT 1182 Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||||||||||||||| || | || || || ||| | Sbjct 1183 TCATCAACAGATGCC-GCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGCAGAAGT 1241 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || |||||||||||||| | || || || ||||| || || Sbjct 1242 AGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTC 1301 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || || |||||||| | ||||| ||| | || Sbjct 1302 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAG 1360 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || || |||||||| | || |||||||| | Sbjct 1361 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTT 1420 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 |||| || || | ||| | ||| || Sbjct 1421 CAGTGCTGGTTATCCAGTTACAGAA 1445 >seq2 Length=62769430 Score = 372 bits (412), Expect = 9e-99 Identities = 633/915 (69%), Gaps = 2/915 (0%) Strand=Plus/Minus Query 25931 AGGTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACT 25990 |||||||| ||||| | | ||||||||| ||| |||| || | | ||| ||| Sbjct 26981504 AGGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACT 26981445 Query 25991 ACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGAT 26050 || || |||||||| || ||||| |||||||| || ||||| |||| ||||| | || Sbjct 26981444 ACGGATTGGTTAAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCG 26981385 Query 26051 GTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTA 26110 || | ||| || || || || ||||||| ||| | |||||||| | |||||| || Sbjct 26981384 GTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTG 26981325 Query 26111 TTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTA 26170 | ||||| ||||| || || || |||| ||||| || || || ||||| || |||||| Sbjct 26981324 CTGAAACTAGCATATTGTAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTA 26981265 Query 26171 TATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTT 26230 || || ||||| ||||| || || || || | ||| || | | ||||| ||| Sbjct 26981264 TAAGTTTCTTCCTCTTGACCGAATCAGTAACCTTCATTAGCAGATTCATTTTCTGTGGTT 26981205 Query 26231 TCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCG 26290 || || | || || ||||| || ||||||||| ||| || | || | | Sbjct 26981204 TCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCTG 26981145 Query 26291 AAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGG 26350 || | ||||| || || ||| || ||||| ||||| || || || ||||| || | | Sbjct 26981144 AATAAACCAGCTACGCCTAACATGTGAAATGGATGCATAAGGATGTTGTGTTCAGCCTAG 26981085 Query 26351 AATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTC 26410 ||||| | ||| ||||| ||||| |||||||| || || ||||| |||||| |||||| Sbjct 26981084 AATACAATCATGAAGTTGAAAGTGCCAGAGATTCCTAGGGGCATACCATCAAAAAAACTT 26981025 Query 26411 CCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATAT 26470 | ||| || | ||||| | ||||| || | | ||| || | | || |||| |||| Sbjct 26981024 CATTGGCCAATTGGATAGATCAAGAAAACAGTGGTAGCAGCTGCAACAGGAGCTGAATAT 26980965 Query 26471 GCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCA 26530 ||||||| || || || | ||| | || | || |||||||||| | || Sbjct 26980964 GCAACAACGATTCAAGGGCGCATACTCAGACGAAAACTAAGTTCCCACTCACGACCCATG 26980905 Query 26531 TATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTAT 26590 || ||||| || | ||||||||| || | ||| | | ||| || ||||||||||| Sbjct 26980904 TAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAAGGATCGCCATTGTAT 26980845 Query 26591 AGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTA 26650 | ||| || || | | | |||||||||||||||||||| |||| || || || | Sbjct 26980844 AACCATTCATCAACAGATACCGCTTCCCAGATCGGGTAAAAGTGTAAACCTATAGCTGCA 26980785 Query 26651 GAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACT 26710 || | | | | ||||| || || |||||||||||||| | || || | ||||| Sbjct 26980784 GAAGTAAGAATAATGGCTCCAGAAATAATATTGTTTCCGTAAAGTAGAGATCTAGAAACA 26980725 Query 26711 GGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACA 26769 || ||||| || ||||| ||||||| || || || || |||||||| | ||||| ||| Sbjct 26980724 GGTTCACGAATACCATCAATATCTATTGGAGGAGCAGCAATGAAGGCGATAATAAATACA 26980665 Query 26770 TGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACG 26829 | ||| || | |||| || ||||| | || || |||||||| | || ||||| Sbjct 26980664 -GAAGTTGCGATCAATAAGGTAGGGATCATTAAAACACCAAACCATCCGATGTAAAGACG 26980606 Query 26830 GTTCTCAGTACTTGT 26844 ||| | ||| || || Sbjct 26980605 GTTTTTAGTGCTAGT 26980591 Score = 334 bits (370), Expect = 2e-87 Identities = 669/986 (68%), Gaps = 23/986 (2%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 40944946 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 40944887 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || | || | | ||||||||| ||| |||| | | || || ||| |||| || Sbjct 40944886 GCACAATTAATAATATCAGCCCAGGTATTAATTA-CACGACTTTGACTATCAACTATGGA 40944828 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 |||||||| || ||||| |||||||| || ||||| |||| ||||| | | || | Sbjct 40944827 TTGGTTAAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAACGGTGAA 40944768 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || ||||||| ||| | |||||||| | |||||| || || || Sbjct 40944767 CCAGATACCTACTCTAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 40944708 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || || ||| ||||| || || || ||||| || |||||| | || Sbjct 40944707 ACTAGCATATTGGAAGATCAAT-GACCAAAATAACCATGAGCAGCTACGATATTAGAAGT 40944649 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| | || ||||| ||||| || | ||| || | | ||||| ||||| Sbjct 40944648 TTCTTCCTACTGACCAAATTTATAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 40944589 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAA-AAGAGCTCCACCGAAAA 26294 || | || || ||||| || ||||||||| ||| ||||| |||||| | Sbjct 40944588 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATGGGAGCT--ACCGAATA 40944531 Query 26295 CCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATA 26354 | | ||| || || ||| || || || ||||| || || || ||||| || ||||||| Sbjct 40944530 CACTAGCTACGCCTAGCATGTGAAACGGATGCATAAGGATGTTGTGTTCAGCCTGGAATA 40944471 Query 26355 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTT 26414 | | ||| || || ||||| |||||||| || || ||||| |||||| |||||| ||| Sbjct 40944470 CAATCATGAATTTGAAAGTGCCAGAGATTCCTAGGGGCATACCATCAGAAAAACTTCCTC 40944411 Query 26415 GTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAA 26474 | | | ||||| | |||||| || | | ||| | | | | || |||||||| Sbjct 40944410 GACTAATTGGATAGATTAAGAAAACAGTGGTAGCAGTTACAATAAGAGTTGAATATGCAA 40944351 Query 26475 CAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATG 26534 || ||||| || | ||| || || | | |||||||||| | || || Sbjct 40944350 CAGCAATCCAAGGGCGCATACCCAGATGGATACTAAGTTCCCACTCACGACCCATGTAAC 40944291 Query 26535 CTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCC 26594 ||||| || | ||||||||| || | ||| | | |||||| ||||||||||||| || Sbjct 40944290 AAGCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATATGGGCCGCCATTGTATAACC 40944231 Query 26595 ACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGG 26654 | || || | | | ||||||| ||||| |||||| || | || || | ||| | Sbjct 40944230 ATTCATCAACAGATGCTGCTTCCCTGATCGAGTAAAAGTGCAAACCTATAACTACAGAAG 40944171 Query 26655 AGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCT 26714 || | | || || || || |||||||||| || |||| || | Sbjct 40944170 TAGGAATAATGGCACCAGAAATAATATTGTTTCTGT---------------AAACAGGTT 40944126 Query 26715 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACAT-GTA 26773 |||| || ||||| ||||||| | || |||| |||||||| | || ||| || | Sbjct 40944125 CACGAATACCATCAATATCTATTGTAGGAGCTGTAATGAAGGCGA-TAGTAAATATAAAA 40944067 Query 26774 GTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833 || || | | |||| || ||||| | || || |||||||| | || ||||| || Sbjct 40944066 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGATTT 40944007 Query 26834 TCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || || | ||| | |||||| Sbjct 40944006 TCAGTGCTGGTTATCCAATTACAAAA 40943981 Score = 192 bits (212), Expect = 2e-44 Identities = 225/303 (74%), Gaps = 1/303 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 48290411 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 48290352 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | || |||||| ||| |||| || | | ||| ||||| || Sbjct 48290351 GCACGGTTAATAATATTAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 48290292 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 |||||||| || ||||| |||||||| || ||||| |||| ||||| | || || | | Sbjct 48290291 TGGTTAAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCGGTGAAC 48290232 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | |||||||| | |||||| || || ||| Sbjct 48290231 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTA-AGAACGAAAATTGTTGAAA 48290173 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 48290172 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 48290113 Query 26177 TCT 26179 ||| Sbjct 48290112 TCT 48290110 Score = 129 bits (142), Expect = 2e-25 Identities = 168/230 (73%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 ||||||||||| || ||||||||||||||||| || ||||||||||| | || ||| || Sbjct 47970695 GCTAAGTCAAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGATA 47970636 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCA---TTAAC-ATCTACTAC 25992 || || || | | |||||| ||||||||| | || || || ||| | || Sbjct 47970635 GCACGATTAATAATATCAGCT----TAGGTATTAATTACACAACCTTGACTATCAAATAT 47970580 Query 25993 TGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGT 26052 || |||||||| || |||||||||||||| || ||||| || | ||||| | || || Sbjct 47970579 GGATTGGTTAAAATTGAAACCATTTAGGTTGAAAGCCATAGTTCTAATACCTAAAGCAGT 47970520 Query 26053 CAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAAC 26102 | ||| || || || || |||||| || | |||||||| | ||||| Sbjct 47970519 GAACCAGATACCTACTACACGCCAAGCAGTTAAGAAGAAATGTAAAGAAC 47970470 Score = 80.6 bits (88), Expect = 8e-11 Identities = 128/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| || | ||| | | ||| || | |||||||||| ||| Sbjct 11756474 GCTACACCAAGTAAGAAGTGTAAAACAATTAACTCATAAGGATCACCATTGTATAACCAT 11756533 Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | |||| |||||||||||||||||||| || | || || || ||| | Sbjct 11756534 TCATCAACAAATGCC-GCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGCAGAAGT 11756592 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || |||||||||||||| | || || | ||||| || || Sbjct 11756593 AGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCTAGAAACAGGTTC 11756652 Query 26716 A 26716 | Sbjct 11756653 A 11756653 >seq1 Length=55868233 Score = 306 bits (338), Expect = 1e-78 Identities = 590/863 (68%), Gaps = 8/863 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||| ||||||| || ||||||||||| | || |||||| Sbjct 42544145 GCTAGGTCTAGAGGGAAGTTATAAGCATTATATTCATGCATAACTTCCATACCAAGGTTA 42544086 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| || |||| || | | ||| ||||| || Sbjct 42544085 GCACGGTTAATAATATCAGCCCAGGTTTTAATTACACGACCTTGACTATCAACTACGGAT 42544026 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 | || ||| || ||| |||||||| || ||||| |||| ||| | | || || | | Sbjct 42544025 TAGTAAAAATTGAAATTGTTTAGGTTGAAAGCCATAGTGCTAATAGCTAAAGCGGTGAAC 42543966 Query 26057 CATATGCCAACAACCGGCCAAGTAGC-AAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 || || || || || ||||| ||| |||||| ||||| | |||||| || || || Sbjct 42543965 CAAATACCTACTACATGCCAATCAGCTAAGAAA-AAATGTAAAGAACGAGAATTGTTGAA 42543907 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || || |||| ||||| || || || ||| | || |||||||| || Sbjct 42543906 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAACTACGATATTATAAGT 42543847 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| | || | || || | ||| || | | ||||| ||||| Sbjct 42543846 TTCTTCCTCTTGACTGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCTT 42543787 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAA--GAGCTCCACCGAAA 26293 || | || || ||||| || ||||||||| ||| | ||| | | |||| Sbjct 42543786 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAACAAGGAGTTGC--CGAAT 42543729 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||| || | ||| | || || ||||| || || || ||||| || | |||| Sbjct 42543728 ACACCAGCTACGTCTAACATGGGAAACGGATGCATAAGGATGTTGTGTTCAGCCTAGAAT 42543669 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 || | ||| ||||| ||||| | |||||| || || ||||| |||||| || ||| ||| Sbjct 42543668 ACAATCATGAAGTTGAAAGTGCTAGAGATTCCTAGGGGCATACCATCAGAAATACTTCCT 42543609 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || || || ||||| | ||||| || ||| ||| || | | | |||| ||||||| Sbjct 42543608 TGACCAAATGGATAGATCAAGAAAACAGCGGTAGCAGCTGCAATATGAGCTGAATATGCA 42543549 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||| ||||| || ||| || | | | || |||||||||| | || || Sbjct 42543548 ACAGCGATCCAAGGGTGCATACCCGGACGGAAACTAAGTTCCCACTCACAGCCCATGTAA 42543489 Query 26534 GCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGC 26593 ||||| || | ||||||||| | | ||| | | ||| || ||||||||||| | Sbjct 42543488 CAAGCTACACCAAGTAAGAAGTGTTAAACAATTAAATCATAAGGATTGCCATTGTATAAC 42543429 Query 26594 CACTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGA 26652 || || | | | || | |||||| ||||||||||||| || | || || || |||| Sbjct 42543428 CATTCATTAATAGATGTC-GCTTCCTAGATCGGGTAAAAGTGCAAACCTATAGCTGTAGA 42543370 Query 26653 GGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGG 26712 | || | | ||| || || || ||||||||| ||| | || || || ||||| || Sbjct 42543369 AGTAGGAATAATTGCACCAGAAATAATATTGTTTTTGTAAAGTAGAGATCCAGAAACAGG 42543310 Query 26713 CTCACGTATGCCATCTATATCTA 26735 ||||| || ||||| ||||||| Sbjct 42543309 TTCACGAATACCATCAATATCTA 42543287 >seq4 Length=62178258 Score = 212 bits (234), Expect = 2e-50 Identities = 237/317 (75%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 6178038 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 6177979 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 6177978 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 6177919 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 |||||||| || ||||| |||||||| || ||||| |||| ||||| | || || | | Sbjct 6177918 TGGTTAAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGTGGTGAAC 6177859 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || |||||||||| | |||||||| | |||||| ||||| ||| Sbjct 6177858 CAGATACCTACTACAGGCCAAGTAGTTAAGAAGAAATGTAAAGAACGAGAATTATTGAAA 6177799 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||| | || |||||||| || Sbjct 6177798 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAACTACGATATTATAAGTT 6177739 Query 26177 TCTTCATCTTGCCCAAA 26193 ||||| ||||| || || Sbjct 6177738 TCTTCCTCTTGACCGAA 6177722 >seq3 Length=45765648 Score = 156 bits (172), Expect = 1e-33 Identities = 298/435 (69%), Gaps = 8/435 (2%) Strand=Plus/Minus Query 25988 ACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATA 26047 ||||| | |||||||| || |||||||||||||| || | ||| |||| ||||| | | Sbjct 43949516 ACTACAAATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTCATAGTGCTAATACCTAAA 43949457 Query 26048 GATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTG 26107 | ||| | ||| || || || || ||||||||||| | ||||||| | | || Sbjct 43949456 GTTGTGAACCAGATACCTACTACAGGCCAAGTAGCTAAGAAGAAATATACAAAATAATAA 43949397 Query 26108 TTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATA 26167 || || |||| ||||| ||||| || ||| | ||| || || | ||| | || ||| Sbjct 43949396 TTGTTGCAACTAGCATATTGAAAGATCAATTGACTAAAATAACCATAAGCAACTACGATA 43949337 Query 26168 TTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTC---CTCT 26224 ||||| || ||||| | ||| || || | || || | ||| | | ||| | | Sbjct 43949336 TTATAAGTTTCTTCCTGTTGACCGAATCTGTAACCTTCATT---AGCAAATTCAATTTTT 43949280 Query 26225 GTCGTTTCTGCAAT-AAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGC 26283 || ||||| || || | | || || ||||| ||||| || || ||| | | Sbjct 43949279 GTGGTTTCCCTGATCAAATTA-GAGGTTACCAAGGAACCGTGTGTAACACTGAATGGGGA 43949221 Query 26284 TCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTC 26343 || ||||| || ||| | | || ||| || ||| | ||||| || ||||| |||| Sbjct 43949220 GCCGCCGAATACACCAACTATGCCTAACATGTGAAATAGATGCATAAGGATATTGTGTTA 43949161 Query 26344 TGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACT 26403 |||| |||||| | || ||||| ||||||||| | || || |||| ||| |||||| Sbjct 43949160 AGCTTAGAATACAATCACGAAGTTGAAAGTACCAAATATTCCTAGAGCCATACCATCAGA 43949101 Query 26404 AAAACTCCCTTGTCC 26418 |||||| ||||| || Sbjct 43949100 AAAACTTCCTTGACC 43949086 >seq12 Length=35429946 Score = 134 bits (148), Expect = 4e-27 Identities = 308/456 (68%), Gaps = 12/456 (3%) Strand=Plus/Minus Query 26411 CCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATAT 26470 ||||| || | ||||| | |||||| || |||| ||| | | || | || |||| Sbjct 33104280 CCTTGACCAATTGGATAGATTAAGAAAACAGCGATAGCAATTGCAACAGGAGTTGAATAT 33104221 Query 26471 GCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCA 26530 | |||| ||||| || || || || | | || |||||||||| | || Sbjct 33104220 GTAACAGCAATCCAAGGGAGTATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATG 33104161 Query 26531 TATGCTGCTACTCCTAT--TAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCA---T 26585 || ||||| || || ||||||||| || | ||| | | ||| || |||| | Sbjct 33104160 TAACAAGCTACACCAATAGTAAGAAGTGTAAAACAATTAACTCATAAGGATTGCCAATAT 33104101 Query 26586 TGTATAGCCACTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATT 26644 |||||| ||| || || | | || | |||||||||||| ||||||| || | || || Sbjct 33104100 TGTATAACCATTCATCAACAGATGTC-GCTTCCCAGATCAGGTAAAAGTGCAAACCTATA 33104042 Query 26645 GCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCG 26704 || ||| | || | | || || || || |||||||||||||| | || || || Sbjct 33104041 GC---AGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCA 33103985 Query 26705 GAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATA 26764 ||||| || ||||| || ||||| |||||||| || || || || |||||||| | ||| Sbjct 33103984 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATA 33103925 Query 26765 AA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATA 26823 || ||| | ||| || | | |||| || ||||| | ||| || |||||| | | || Sbjct 33103924 AATACA-GAAGTTGCGGTCAATAAGATAGGGATCATCAACACACCAAACCATTCGATGTA 33103866 Query 26824 GAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 ||||| | ||||| || || | ||| | ||| || Sbjct 33103865 AAGACGAGTTTCAGTGCTAGTTATCCAATTACAGAA 33103830 Score = 127 bits (140), Expect = 6e-25 Identities = 228/324 (70%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 26539 TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTC 26598 ||| || | ||||||||| | | ||| | | ||| || || |||||||||| | | || Sbjct 32313993 TACACCAAGTAAGAAGTGTTAAACAATTAACTCATAAGGACCACCATTGTATA-CTATTC 32314051 Query 26599 GTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGG 26657 || | | |||| |||||||||||||||||||| || | | || || ||| | | Sbjct 32314052 ATCAACAGATGCC-GCTTCCCAGATCGGGTAAAAGTGCAAACGAATAGCTGCAGAAGTAG 32314110 Query 26658 GGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCAC 26717 | | | || || || || |||||||||||||| | || || | ||||| || |||| Sbjct 32314111 GAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATTCAGAAACAGGTTCAC 32314170 Query 26718 GTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTG 26776 | || ||||| |||||||| | || || | |||||||| | ||||| ||| ||| Sbjct 32314171 GAATACCATCAATATCTACTAGAGGAGCAGTAATGAAGGCGATAATAAATACA-AAAGTT 32314229 Query 26777 GCTGCGAGTAA-GCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 || | | ||| | |||| ||||| | || || |||||||| | || |||||||| || Sbjct 32314230 GCGGTCAATAATGTAGGG-ATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTC 32314288 Query 26836 AGTACTTGTAACCCACTCACAAAA 26859 ||| | || | ||| | |||||| Sbjct 32314289 AGTGTTGGTTATCCAATTACAAAA 32314312 >seq6 Length=51074515 Score = 109 bits (120), Expect = 2e-19 Identities = 187/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 26324 TGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATA 26383 ||||| || || || || || | ||||||| || ||| ||||||||||| |||||||| Sbjct 39117831 TGCATAAGAATGTTGTGCTCAGTCTGGAATAAGATCATGAAGTTAAAAGTGCCAGAGATT 39117772 Query 26384 CCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCG 26443 || || ||||| | || | |||||| ||||| || | ||||| | || || || || Sbjct 39117771 CCTAGGGGCATACAATAAGAAAAACTTCCTTGACCAATTGGATAGATCAATAAAACAACG 39117712 Query 26444 AGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTG 26503 ||| | | | || | || ||||||||||| ||||| || | ||| ||||| | Sbjct 39117711 GTAGCAACTGCAACAGGAGTTGAATATGCAACAATGATCCAAGGGCGCATACCTAGAAGG 39117652 Query 26504 TAAGATAGTTCCCACT-GTCTCCC-TGCATATGCTGCTACTCCTATTAAGAAGTGGAAGA 26561 || |||||||||| | ||| || || |||| || | ||||||||| || | Sbjct 39117651 AAACTAAGTTCCCACTCATGACCCATG--TAACAAGCTATACCAAGTAAGAAGTGTAAAA 39117594 Query 26562 TAATGAGTTGATATGGTCCGCCATTGTA 26589 ||| | | ||| || ||||||||||| Sbjct 39117593 GAATTAACTCATAAGGACCGCCATTGTA 39117566 >seq5 Length=64140413 Score = 98.7 bits (108), Expect = 3e-16 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | | |||||| Sbjct 36123558 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACTAAGGTTA 36123617 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || || || | | |||| || || || |||| | | ||||| || ||||| || Sbjct 36123618 GCACGATTAATAATATCAACCTATCTATTAATTA-CACAACTTTAACTATTAACTACAGA 36123676 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGC 26036 | |||||| |||||| | |||||||| || ||||| |||| Sbjct 36123677 TTAGTTAAAATTAAAATCGTTTAGGTTGAAAGCCATAGTGC 36123717 Score = 89.7 bits (98), Expect = 2e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 25882 GTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCG 25941 ||| || || ||||||||||||||| | || ||||||||||| | || ||||||||||| Sbjct 8904947 GTCTAGAGGGAAGTTATGAGCATTATGTTCATGCATAACTTCCATACCAAGGTTAGCTCG 8904888 Query 25942 GTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTT 26001 || | | |||| |||| || |||| | || | | ||| ||||| | ||||| Sbjct 8904887 ATTAATAATATCAACCCAAATATTAATTACACTACCTTGACTATCAACTACAAATTGGTT 8904828 Query 26002 AAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| || |||| ||||| || || || || ||| ||||| Sbjct 8904827 AAAATTGAAACTATTTAAATTGAAAGCTATAGTGTTAATACC 8904786 >seq11 Length=62681010 Score = 80.6 bits (88), Expect = 8e-11 Identities = 209/315 (66%), Gaps = 13/315 (4%) Strand=Plus/Minus Query 25878 CTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAG 25937 ||| || || ||||||||||||||||||| || |||| |||||| | || ||||||| Sbjct 23641725 CTAGGTTTAGAGGAAAGTTATGAGCATTACTGTCATGCAAAACTTCCATACCAAGGTTAG 23641666 Query 25938 CTCGGTTTAATACATCAGCCCATGTAGGTATTAT-CTTTCCATTAAC-ATCTACTACTGA 25995 | | | ||||| | | ||| ||||| | || ||||| || ||||| | Sbjct 23641665 C--------ACATATCAGTCAAGGTATTAATTATACGATC--TTAACTATTAACTACGAA 23641616 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||||| || |||| ||||| ||| || ||| | || ||| | | | || | Sbjct 23641615 TTGGTTAAGATTGAAACTATTTAAGTTGAAAGCCTTAATGTTAATATCTAAAACGGTGAA 23641556 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 | | || | || || |||||| || | |||||||| | | |||| | || || Sbjct 23641555 CTAGATACTTACTACATGCCAAGCAGTTAAGAAGAAATGTAAATAACGAAAATGGTTGAA 23641496 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||| | | || || |||| ||||| || | | ||| ||||||||||| || Sbjct 23641495 ACTAGCA-ATTCGAAGATCAATCGGCCAAAATAATCATAAATAGCTACAATATTATAAGT 23641437 Query 26176 CTCTTCATCTTGCCC 26190 ||||| | ||| || Sbjct 23641436 TTCTTCCTTTTGACC 23641422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147710186281280