Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2 131 3e-25 seq9 127 4e-24 seq7 109 1e-18 seq4 105 1e-17 seq11 104 4e-17 seq8 104 4e-17 seq3 91.5 3e-13 seq13 84.2 4e-11 >seq2 Length=62769430 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| ||| | |||| ||| || |||||||| ||| Sbjct 27609689 ATACCACCCCGAAGGCGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCG 27609630 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| ||| || | ||||||||| |||||||| ||||| ||||| || || Sbjct 27609629 GCAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGT 27609570 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || || |||| ||| | ||| ||| ||||| ||| ||| Sbjct 27609569 GGGATTCCTTCTTTGTCCTGAATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCG 27609510 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || || || || || || ||||| ||||| |||||||| Sbjct 27609509 ACCTCCAAGGTGATTGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 27609460 Score = 116 bits (128), Expect = 7e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | |||| ||| | |||| ||| || ||| || Sbjct 10572126 AATTTGCATACCACCACGAAGACGCAACACCAAATGGAGGGTAGACTCCTTTTGAATGTT 10572067 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| | | ||||| ||| || | ||||| || ||||||||||| ||||| || Sbjct 10572066 ATAGTCTGCAAGGGTTCTGCCATCTTCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTG 10572007 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || || || || || |||| || | || ||| ||||| || Sbjct 10572006 GTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTATCAATTGTATCAGA 10571947 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || |||| ||| || ||||| || || |||||||||||||| || ||||| Sbjct 10571946 ACTCTCCACCTCTAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAGATCTGCAT 10571890 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| || | ||||| || || || | |||| |||||| || || ||||| Sbjct 10571891 ATGCCACCCCTAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCA 10571832 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | |||||| || ||||| || | |||||||| |||||| Sbjct 10571831 GCAAGGGTGCGGCCATCCTCCAGTTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCAGGA 10571772 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || |||| || | ||| ||| || ||||| || Sbjct 10571771 GGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTGTCGGAGCTTTCC 10571712 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || ||||| |||||||||||||| Sbjct 10571711 ACTTCAAGGGTGATTGTCTTGCCAGTAAGGGTTTTGACAAATATTTGCAT 10571662 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| ||||| ||||| |||| || | || | ||| || ||| || Sbjct 10549400 ATTTGCATACCACCCCTCAAACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTG 10549341 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || | | ||| |||| || || || ||||| || | ||||||||| Sbjct 10549340 TAGTCAGCAAGTGTACGACCATCCTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGA 10549281 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| || |||| || | ||| || || ||||| Sbjct 10549280 TCTGGTGGGATTCCTTCTTTATCTTGGATCTTGGCCTTGACATTATCGATGGTGTCGGAG 10549221 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || || || || |||||||| Sbjct 10549220 CTTTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 10549165 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| || | ||||| || || || | |||| |||||| ||| || Sbjct 10571669 ATTTGCATGCCACCCCTGAGACGAAGCACAAGGTGGAGGGTAGACTCTTTTTGAATGTTG 10571610 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || | | ||| || | ||| || |||||||| || | |||||||| Sbjct 10571609 TAGTCAGCAAGGGTGCGACCATCTTCAAGTTGCTTACCGGCAAAGATAAGCCTCTGTTGG 10571550 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || ||||||||||| || || || | || | ||| ||| || || || Sbjct 10571549 TCAGGGGGGATCCCTTCTTTATCCTGGATCTTAGCCTTGACATTATCAATTGTGTCAGAG 10571490 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || |||||||| || || ||||| Sbjct 10571489 CTTTCAACCTCAAGGGTGATTGTCTTGCCAGTAAGGGTTTTTACGAAGATCTGCAT 10571434 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||| | ||||||||||| || | || | |||||| ||||| Sbjct 27609467 ATTTGCATGCCACCTCGAAGACGAAGTACCAGGTGGAGGGTGGACTCTTTTTGGATATTG 27609408 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | ||| || | | ||| || | || ||||| ||||| || | ||||| ||| Sbjct 27609407 TAATCAGCTAAGGTGCGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGA 27609348 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| || || | |||| ||| ||| || || || Sbjct 27609347 TCTGGTGGGATCCCTTCCTTGTCTTGGATCTTTGCCTTTACATTATCAATTGTGTCAGAG 27609288 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || | || || || || || || || || || ||||| |||||||| Sbjct 27609287 CTTTCAACCTCCAAGGTAATTGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 27609232 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || |||||||| || || |||||||| || || || || || || || Sbjct 10550004 ATCTTCAAGTTGCTTACCGGCAAAGATCAACCTCTGTTGGTCTGGGGGAATACCCTCCTT 10549945 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | || | ||| ||| ||||| ||| |||||| || | ||| || Sbjct 10549944 GTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCAAAGTAAT 10549885 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || |||||||||||||| Sbjct 10549884 GGTCTTTCCGGTAAGAGTCTTCACAAATATTTGCAT 10549849 >seq9 Length=70713020 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| || | ||||| || || || | |||| |||||| || || || || Sbjct 66882036 ATCCCACCCCTAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCT 66882095 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || ||| ||| || | |||||||||||||||||| || ||||| ||||| || Sbjct 66882096 GCAAGTGTCCTACCATCTTCGAGTTGTTTTCCGGCAAAAATCAACCTCTGCTGATCTGGT 66882155 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || |||| || | ||| ||||||||||| ||| Sbjct 66882156 GGAATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATAGTATCGGAGCTCTCC 66882215 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || ||||||||||| || ||||| Sbjct 66882216 ACCTCAAGGGTGATGGTCTTACCAGTAAGGGTTTTTACAAAGATCTGCAT 66882265 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| || | ||||| || ||||| | || | ||| || ||||| |||||| Sbjct 66882492 ATGCCACCCCTTAGACGAAGGACTAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCG 66882551 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| ||| || | ||||||||||||||| || | || || || |||||| Sbjct 66882552 GCAAGAGTTCGGCCATCCTCGAGTTGTTTTCCGGCAAAGATAAGCCTTTGCTGGTCAGGA 66882611 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| | || | ||| |||||||| ||| || Sbjct 66882612 GGGATCCCTTCTTTGTCTTGGATTTTAGCCTTGACATTATCGATAGTATCAGAACTTTCT 66882671 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || ||||| ||||| || ||||| Sbjct 66882672 ACCTCAAGGGTGATGGTCTTACCAGTAAGGGTTTTCACAAAGATCTGCAT 66882721 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| || | ||||| || || || | || | ||| || || || |||||| Sbjct 66888646 ATGCCACCCCTTAGACGAAGGACTAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCG 66888705 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| ||| || | ||||||||||||||| || | || ||||| || ||| Sbjct 66888706 GCAAGAGTTCGGCCATCCTCAAGTTGTTTTCCGGCAAAGATAAGCCTTTGTTGGTCTGGA 66888765 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||||| || | ||| ||||||||||| || Sbjct 66888766 GGAATCCCTTCTTTGTCTTGGATTTTGGCCTTGACATTATCGATAGTATCGGAGCTTTCT 66888825 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || ||||| ||||| |||||||| Sbjct 66888826 ACCTCAAGGGTGATGGTCTTACCAGTAAGGGTTTTCACAAAGATTTGCAT 66888875 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||| || |||| ||||| || | ||| || || ||||| || Sbjct 66888190 ATTCCACCACGCAGTCGCAGCACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAATCC 66888249 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| || | || |||||||||||||| | ||||| ||||| || Sbjct 66888250 GCTAGTGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAAATCAGCCTCTGCTGATCTGGT 66888309 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || |||| || | ||| ||| ||||| ||| ||| Sbjct 66888310 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTAACATTATCAATGGTATCAGAACTCTCC 66888369 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || ||||| || || || |||||||||||||| ||||| Sbjct 66888370 ACCTCCAAAGTGATGGTTTTTCCGGTGAGGGTTTTTACAAATATCTGCAT 66888419 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| |||||||| | | |||| ||| || | || ||||| |||||||| || || Sbjct 66881855 AATGTTATAGTCCGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCT 66881914 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| || || || || || ||||| ||||| || || |||| || | ||| ||| || Sbjct 66881915 CTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGAATCTTGGCCTTAACATTATCAATCGT 66881974 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| ||| ||| || || | || |||||||| || || || ||||||||||| || || Sbjct 66881975 ATCAGAACTCTCCACCTCCAACGTAATAGTTTTTCCGGTGAGGGTTTTTACAAAAATCTG 66882034 Query 193358 CAT 193360 ||| Sbjct 66882035 CAT 66882037 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || | |||| ||||| || | || || || |||||||| Sbjct 66887734 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCC 66887793 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| || ||| || | || |||||||||||||| || ||||| || || ||| Sbjct 66887794 GCAAGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGA 66887853 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || ||||| | ||| | ||| ||| || || || ||| Sbjct 66887854 GGAATCCCCTCCTTGTCCTGAATTTTCGCTTTAACATTGTCAATGGTGTCCGAGCTCTCG 66887913 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| |||||||| || | || || || ||||| ||||| Sbjct 66887914 ACCTCCAGTGTTATGGTTTTACCAGTCAAGGTCTTAACGAATATCTGCAT 66887963 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||| | ||| | |||| ||||| || | || || || |||||||| Sbjct 66881352 ATCCCTCCTCGAAGTCGTAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAGTCT 66881411 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || |||||||||||||| || ||||| || || ||| Sbjct 66881412 GCAAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGA 66881471 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || ||||| | ||| | ||| ||| || || || ||| Sbjct 66881472 GGAATCCCCTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAATGGTGTCCGAGCTCTCG 66881531 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || |||||||| || | || || || ||||| ||||| Sbjct 66881532 ACCTCCAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAATATCTGCAT 66881581 >seq7 Length=60982465 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| ||| || | ||| || | ||| || ||||| || || | | Sbjct 9403933 ATGTTGTAGTCGGCTAAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATAAGACGT 9403874 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| ||||| || || ||||| || ||||| || || | ||| | ||| ||| || Sbjct 9403873 TGTTGGTCAGGTGGAATGCCTTCCTTGTCTTGGATCTTAGCTTTGACATTGTCAATGGTG 9403814 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||||||| || ||||| |||||||| || || ||||| ||||| || || || ||| Sbjct 9403813 TCGGAAGACTCGACCTCTAGGGTTATAGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGC 9403754 Query 193359 ATTTT 193363 || || Sbjct 9403753 ATCTT 9403749 >seq4 Length=62178258 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| ||| || | || || | ||| || ||||| || || | | Sbjct 4510726 ATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGTTGCTTACCGGCGAAGATGAGGCGT 4510667 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || ||||| |||||||| ||||| || |||| ||| | ||| || || Sbjct 4510666 TGTTGGTCCGGGGGTATGCCTTCTTTGTCTTGGATCTTGGCTTTGACATTATCGATTGTG 4510607 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||||||| || ||||| ||||| || || || ||||| ||||| || || || ||| Sbjct 4510606 TCGGAAGACTCGACCTCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGC 4510547 Query 193359 ATT 193361 ||| Sbjct 4510546 ATT 4510544 >seq11 Length=62681010 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||||| ||| || | || || | || || ||||| || || | | Sbjct 3842830 ATATTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAAGATAAGGCGT 3842889 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| || ||||| || ||||| || |||| ||| | ||| || || Sbjct 3842890 TGTTGATCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTG 3842949 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||||||| || || || ||||| ||||| || ||||| ||||| || || || ||| Sbjct 3842950 TCGGAAGACTCGACCTCAAGGGTTATGGTTTTCCCCGTTAGGGTTTTGACGAAGATCTGC 3843009 Query 193359 ATTTT 193363 || || Sbjct 3843010 ATCTT 3843014 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || || || | || | ||| || |||||| || || | || || || | Sbjct 1163237 CGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCA 1163296 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| || |||||||| || || || ||||| || || ||||||||||| Sbjct 1163297 TCTTCCAGCTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTG 1163356 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | ||| | || ||| ||||| || ||| ||||||| ||| || Sbjct 1163357 TCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACTTCTAAAGTAATC 1163416 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || | || || || || || ||||| Sbjct 1163417 GTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 1163451 >seq8 Length=57128820 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| ||| || | || || | || || |||||||| || | | | Sbjct 38526327 ATGTTGTAGTCGGCTAAGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGC 38526268 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || || || || ||||| || |||| ||| | ||| || || Sbjct 38526267 TGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTG 38526208 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 |||||||||||||| ||||| ||||| || || || ||||| ||||| || || |||||| Sbjct 38526207 TCGGAAGACTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATTTGC 38526148 Query 193359 ATTTT 193363 || || Sbjct 38526147 ATCTT 38526143 >seq3 Length=45765648 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 193145 TCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGA 193204 |||||| |||| ||| | || | |||||| ||||||||| || | | || || Sbjct 27760473 TCGAAGAACCAAATGAAGAGTTGACTCTTTTTGAATATTATAATCAGTAAGAGTCCTTCC 27760414 Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT------CAGGAGGTATTCC 193258 ||| || | ||||| ||| |||||||||||||| || || | ||| | || || Sbjct 27760413 ATCCTCAAGTTGTTCTCCTGCAAAAATTAATCTTTGCTGGTTTGGGCAAGGGGAGATACC 27760354 Query 193259 TTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAG 193318 ||||| || || |||||| ||| | | | |||||||| ||| ||||||||| | Sbjct 27760353 CTCTTTTTCCTGAATTTTGTCTTTCACAATATCAATAGTATTTGAACTCTCAACTTCCAA 27760294 Query 193319 AGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || | || | ||||||||||| || Sbjct 27760293 TGTAATTGTTTTTCCAGTAAAGGTCTGGACAAATATTTGGAT 27760252 >seq13 Length=58321163 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| || | || | ||| || ||||||||||| Sbjct 44437175 ATACCACCACGAAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTATAGTCA 44437234 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | ||| || || |||||||| | |||||||| || || Sbjct 44437235 GCCAGGGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGG 44437294 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || ||||| | || | ||| ||| ||||| ||| ||| Sbjct 44437295 GGGATTCCCTCCTTGTCCTGAATTTTTGCCTTAACATTGTCAATGGTATCTGAACTCTCT 44437354 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | || || || || || || | || || ||||| ||||||||| Sbjct 44437355 ACCTCCAATGTAATGGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCATT 44437405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899642771966880