Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq11 138 2e-27 seq2 125 1e-23 seq9 113 7e-20 seq3 100 4e-16 seq511 98.7 1e-15 seq1 96.9 5e-15 >seq11 Length=62681010 Score = 138 bits (152), Expect = 2e-27 Identities = 363/553 (66%), Gaps = 9/553 (2%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || || ||||| ||| | ||||||||||| || ||||| ||||| || ||| Sbjct 8942323 AAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 8942264 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || |||||||||| || || ||||||| ||||||||| | |||||| | || || Sbjct 8942263 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 8942204 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || || || || ||||| || || || ||||| | ||| || || | || | | | Sbjct 8942203 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAA-----AGTTTCTCCGC 8942149 Query 18335 AGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 || |||||||| ||||| || ||| | |||||| | |||| || | Sbjct 8942148 CGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGG 8942089 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 | || | | | ||||| | |||||||||||| ||||| |||| | | | | Sbjct 8942088 CGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGT 8942029 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 |||| || || || || |||| ||||| || || |||| |||||| | | ||||||| Sbjct 8942028 ACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGG 8941969 Query 18513 -GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 ||| || | ||| | || | | | | |||||| ||||| || || | Sbjct 8941968 AGAT-CTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAG 8941910 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631 | |||||||| || | ||| | ||||||| || | |||| | ||||| | | | Sbjct 8941909 GCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTTCC 8941850 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || | | | ||| || ||||| ||||| || | |||||||| || | |||||| Sbjct 8941849 CAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCT 8941790 Query 18692 TGTTTGTACATTT 18704 | |||||||||| Sbjct 8941789 TTCTTGTACATTT 8941777 >seq2 Length=62769430 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | |||||||| || || || || || ||||| ||| Sbjct 27609460 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATCACCTTGGAGGTCGAGAGTTCG 27609519 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || |||||||| || || ||||| ||| Sbjct 27609520 GATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAA 27609579 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || || || |||||| |||||| | | ||||||||| Sbjct 27609580 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATAAT 27609639 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || || ||||| || Sbjct 27609640 ATCCAGAAGGAGTCTACTCTCCATTTGGT 27609668 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||||||||| || || ||||| || || |||| Sbjct 10571890 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTAGAGGTGGAGAGTTCT 10571949 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || || || || || ||||| || ||||| || Sbjct 10571950 GATACAATTGATAACGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 10572009 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || || |||| ||| || || ||||| |||||| |||||| | |||| ||||| Sbjct 10572010 CAGAGGTTAATTTTTGCTGGGAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAAC 10572069 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| ||| | || || ||||| ||||| Sbjct 10572070 AT-TCAAAAGGAGTCTACCCTCCATTTGGTGTT 10572101 Score = 93.3 bits (102), Expect = 6e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | || ||||| || ||||| || || || || ||| Sbjct 10549849 ATGCAAATATTTGTGAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGTTCA 10549908 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||| || || || || || || || || ||||| ||| Sbjct 10549909 GATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 10549968 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||||||||| || |||||| | | ||| | | ||||| | Sbjct 10549969 CAGAGGTTGATCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACA-- 10550026 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| || | || || ||||| ||| Sbjct 10550027 ACATCCAAAAGGAATCCACCCTCCATTTGGTG 10550058 Score = 93.3 bits (102), Expect = 6e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || || ||||| || || Sbjct 10550077 ATGCAGATTTTTGTGAAGACTCTTACCGGGAAAACCATCACCTTGGAAGTTGAGAGCTCC 10550136 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||||| || || || ||||| || |||||||| ||| Sbjct 10550137 GACACTATTGACAATGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCTCCAGACCAA 10550196 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| || ||||||||||| || ||| ||| || | |||| || || Sbjct 10550197 CAGAGGTTGATTTTCGCGGGTAAGCAGCTTGAGGATGGCAGGACACTTGCAGACTACAAC 10550256 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| |||| || ||||| || Sbjct 10550257 AT-TCAAAAGGAGTCGACCCTCCATTTGGT 10550285 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | |||||||| ||||| || |||| || ||| ||| Sbjct 27609916 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAGACTATCACTCTAGAGGTTGAAAGTTCA 27609975 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || ||||| || ||||| || || ||||| || Sbjct 27609976 GACACCATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCAGACCAG 27610035 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || ||||| || |||||| ||| || || | ||||||| Sbjct 27610036 CAAAGGCTCATATTTGCTGGCAAGCAACTTGAAGATGGCAGGACATTGGCTGATTATA-- 27610093 Query 156003 ATATCCAAA--GAGGCGACGCTTCAT 156026 ||||||||| ||| | || || ||| Sbjct 27610094 ATATCCAAAAGGAGTCTACTCTGCAT 27610119 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || ||||| || || || || || || ||| ||| Sbjct 27609688 ATGCAGATCTTTGTAAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTTGAAAGTTCC 27609747 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || ||||| || || || || || ||||| || Sbjct 27609748 GATACCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGACCAG 27609807 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || ||||||||||||||| || || || | || || | Sbjct 27609808 CAAAGGCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGTAGGACATTGGCCGACTACA-- 27609865 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 ||||||||| ||| | || ||||| || ||||| Sbjct 27609866 ATATCCAAAAGGAGTCTACCCTTCACTTGGTGTT 27609899 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || || || ||||| || | || || ||| || Sbjct 10549393 ATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCG 10549452 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || ||||| |||||||| || |||||||| || Sbjct 10549453 GACACCATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCTCCAGACCAG 10549512 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | |||||||||||| || |||||| | | || | | ||||| | Sbjct 10549513 CAGAGACTTATCTTTGCCGGTAAGCAACTAGAAGATGGCCGTACCCTGGCTGATTACA-- 10549570 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| ||| | || || ||||| ||| Sbjct 10549571 ACATCCAAAAGGAGTCCACCCTCCATTTGGTG 10549602 >seq9 Length=70713020 Score = 113 bits (124), Expect = 7e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || ||||| |||||||| || ||||| || |||| Sbjct 66881809 ATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCT 66881750 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||| || || || || ||||| || || ||||| || Sbjct 66881749 GACACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAG 66881690 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || || |||||||||||| || || | ||||||||||| Sbjct 66881689 CAGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAAT 66881630 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || || || || ||| Sbjct 66881629 ATCCAGAAAGAGTCTACCCTCCACTTGGTG 66881600 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || |||||||||||||| || || || || |||| Sbjct 66882037 ATGCAGATTTTTGTAAAAACCCTCACCGGAAAAACTATTACGTTGGAGGTGGAGAGTTCT 66881978 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || || ||||| ||||| || || || || || Sbjct 66881977 GATACGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGGATCCCACCGGACCAG 66881918 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || |||||||| |||||| | ||||| | | || ||||| Sbjct 66881917 CAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTATAAC 66881858 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || || |||| || ||||| |||||| Sbjct 66881857 ATTCAGAAGGAATCGACCCTCCATTTGGTGTTA 66881825 Score = 107 bits (118), Expect = 3e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| ||||||||||||||||||||||| || || || ||| Sbjct 66888192 AATGCAGATTTTTGTGAAAACTTTGACTGGAAAAACTATTACATTGGAGGTGGAGAGTTC 66888133 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||||| || || ||||| || || || || || || || || Sbjct 66888132 AGACACAATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCA 66888073 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||||| ||| || ||||| ||||| ||| || || | | ||||||| Sbjct 66888072 GCAGAGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGGAGGACGCTTGCGGATTATA- 66888014 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || || || || || Sbjct 66888013 -ACATCCAAAAGGAGTCAACCCTGCACTTGGT 66887983 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| ||||||||||| ||||| || ||||| || || ||| ||| Sbjct 65274094 ATGCAGATTTTCGTTAAGACATTGACTGGGAAAACAATCACATTGGAGGTGGAAAGTTCG 65274153 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || || || || ||||| || || ||||| || Sbjct 65274154 GATACAATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAAGGTATCCCCCCAGATCAG 65274213 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || ||||| | || ||| || |||||| | |||||||| Sbjct 65274214 CAAAGGCTCATCTTTGCTGGCAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAAC 65274273 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 65274274 ATTCAGAAAGAGTCCACCCTTCA 65274296 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| | || |||||||| || || || || || || |||| Sbjct 66888419 ATGCAGATATTTGTAAAAACCCTCACCGGAAAAACCATCACTTTGGAGGTGGAGAGTTCT 66888360 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || || || || || || || || ||||| || Sbjct 66888359 GATACCATTGATAATGTTAAGGCCAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 66888300 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| |||||| ||||||||||| ||| || || || | ||||||| Sbjct 66888299 CAGAGGCTGATTTTTGCCGGAAAGCAGCTCGAGGATGGGAGGACACTAGCGGATTATA-- 66888242 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| ||| | || || ||||| ||| Sbjct 66888241 ACATCCAAAAGGAGTCAACCCTGCATTTGGTG 66888210 >seq3 Length=45765648 Score = 100 bits (110), Expect = 4e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 || ||||||||| | | || || ||||||||||| |||||||| ||||| || ||| Sbjct 27760252 ATCCAAATATTTGTCCAGACCTTTACTGGAAAAACAATTACATTGGAAGTTGAGAGTTCA 27760311 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCAT---ACCT---CCA 155936 ||| |||| | |||||| | ||||| || || ||||| || || ||| ||| Sbjct 27760312 AATACTATTGATATTGTGAAAGACAAAATTCAGGAAAAAGAGGGTATCTCCCCTTGCCCA 27760371 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 | || |||||||| |||| ||| || | || || || ||| || ||| | | ||| Sbjct 27760372 AACCAGCAAAGATTAATTTTTGCAGGAGAACAACTTGAGGATGGAAGGACTCTTACTGAT 27760431 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 |||||||| |||||| | || |||||||| || Sbjct 27760432 TATAATATTCAAAAAGAGTCAACTCTTCATTTGGT 27760466 >seq511 Length=6087 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || |||||||||||||| ||||| || || || || ||||||| ||| |||||||| || Sbjct 345 CAGGATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTG 404 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAG 156030 |||||| | |||| || | ||||||| | ||||||| ||| | || ||||| ||| Sbjct 405 GAAGATGGCCGAACCCTAGCTGATTATA--ACATCCAAAAGGAGTCCACTCTTCACCTAG 462 Query 156031 TGTTAAG 156037 ||||||| Sbjct 463 TGTTAAG 469 >seq1 Length=55868233 Score = 96.9 bits (106), Expect = 5e-15 Identities = 356/555 (64%), Gaps = 13/555 (2%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || ||||| || || | ||||||||||| || || || | ||| || ||| Sbjct 54862748 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTTGTTTGAGAAAGTT 54862689 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||||| || | ||||||| ||||||||||| |||||| | || || Sbjct 54862688 TATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAA 54862629 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA-CTGTATTTATTG-C 18332 ||||| || || ||||| ||||| || ||||| | ||| |||||| || | | | Sbjct 54862628 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCT-------TCGCC 54862576 Query 18333 TCAGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTAT 18390 | || |||||||| ||||| || ||| | ||||| | | || | Sbjct 54862575 GCCGTCGATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGT 54862516 Query 18391 AGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGA 18450 ||| | || | | ||||| |||||||||| |||||||| |||| | | | Sbjct 54862515 AGCGTGGAAGAGGCGGTTCTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACT 54862456 Query 18451 ATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT- 18509 |||||| ||||| || || | || || || || || || | |||||| | | |||| Sbjct 54862455 ATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTC 54862396 Query 18510 CGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAG 18569 || ||| ||| | ||| | || | | | | ||| || || || || || | Sbjct 54862395 CGCGAT-TTGGACCTCTTTCATGAAGCGAACGGCGAGATTTTCTAGGACGATGCCATCGG 54862337 Query 18570 CAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGT 18629 | ||||| || || | |||| | ||||| || ||| | | || ||||| | Sbjct 54862336 ATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTT 54862277 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689 ||| | | ||| || ||||||||||| || | ||||||||||| | ||||| Sbjct 54862276 GCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGG 54862217 Query 18690 CCTGTTTGTACATTT 18704 | | |||||||||| Sbjct 54862216 CTTTCTTGTACATTT 54862202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731862540554400