Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 seq9 118 2e-21 seq11 116 7e-21 seq13 114 3e-20 seq6 105 1e-17 seq511 104 5e-17 seq12 95.1 2e-14 >seq2 Length=62769430 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| |||||||| | || | || | |||| |||||| ||| || || ||| Sbjct 10571891 ATGCCACCCCTAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCA 10571832 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| |||||||||||||||||| | |||||||| ||||| Sbjct 10571831 GCAAGGGTGCGGCCATCCTCCAGTTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCAGGA 10571772 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || |||||| || | || || ||| Sbjct 10571771 GGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTGTCGGAGCTTTCC 10571712 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || || || ||||| | ||||| | |||||| ||||| Sbjct 10571711 ACTTCAAGGGTGATTGTCTTGCCAGTAAGGGTTTTGACAAATATTTGCAT 10571662 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || | || ||||| | ||||| ||| || |||||||||||| Sbjct 27609689 ATACCACCCCGAAGGCGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCG 27609630 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | |||||| |||||||| || ||||| ||||| || ||| Sbjct 27609629 GCAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGT 27609570 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || || || ||| |||||| || | ||| || || Sbjct 27609569 GGGATTCCTTCTTTGTCCTGAATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCG 27609510 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || || || || ||||| | ||||| | ||| || ||||| Sbjct 27609509 ACCTCCAAGGTGATTGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 27609460 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| |||||| | ||| | || | || | |||||| |||||| |||||| Sbjct 27609461 ATGCCACCTCGAAGACGAAGTACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCA 27609402 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || || |||| || | || || ||||||||||| | ||||| ||||| ||| Sbjct 27609401 GCTAAGGTGCGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGT 27609342 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || ||||||||| || | || || ||| Sbjct 27609341 GGGATCCCTTCCTTGTCTTGGATCTTTGCCTTTACATTATCAATTGTGTCAGAGCTTTCA 27609282 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| || || ||||| | || || | ||| || ||||| Sbjct 27609281 ACCTCCAAGGTAATTGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 27609232 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||| | ||||| ||| || |||||||||||||| Sbjct 27610143 ACCACCGCGAAGGCGAAGGACAAGATGCAGAGTAGACTCCTTTTGGATATTATAATCAGC 27610084 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||| | |||| || | ||| || |||||||| || | || || || || ||||| Sbjct 27610083 CAATGTCCTGCCATCTTCAAGTTGCTTGCCAGCAAATATGAGCCTTTGCTGGTCTGGTGG 27610024 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || || ||||| || | ||||| ||| || Sbjct 27610023 GATCCCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATGGTGTCTGAACTTTCAAC 27609964 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || || || ||||| | || |||| ||| |||||||| Sbjct 27609963 CTCTAGAGTGATAGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 27609916 Score = 96.9 bits (106), Expect = 7e-15 Identities = 166/240 (69%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || | ||| | || || || | || | ||| || || || || ||| Sbjct 10549394 ATACCACCCCTCAAACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCA 10549335 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| || | || |||||||||||||| | ||||||||||| ||| Sbjct 10549334 GCAAGTGTACGACCATCCTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCTGGT 10549275 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| || || || |||||| || | || || ||| Sbjct 10549274 GGGATTCCTTCTTTATCTTGGATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCC 10549215 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 || || || || ||||| || || || | || || | || || |||| | |||| ||| Sbjct 10549214 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATTTGCA-TCTATTTGAA 10549156 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || ||||| | || | || || ||| || || ||| Sbjct 10549850 ATACCACCACGAAGACGAAGCACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCA 10549791 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || ||||| |||||||||||||| || ||||| || || || Sbjct 10549790 GCCAGGGTGCGGCCATCTTCTAATTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGC 10549731 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || ||| || ||||| || | |||||| || Sbjct 10549730 GGAATACCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCTGAACTCTCA 10549671 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||| || || || || || || |||| ||| || |||||| Sbjct 10549670 ACCTCCAAAGTAATTGTCTTTCCGGTCAAGGTCTTAACAAAGATTTGCATT 10549620 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | || || | || | ||| | ||||| ||| || |||||| || |||| Sbjct 10572345 ACCACCACGGAGGCGAAGGACAAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGC 10572286 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||||| | || ||||| || || ||||||||||| || ||||| ||||| || || Sbjct 10572285 TAGAGTTCGACCGTCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGG 10572226 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || || || || || ||||||||| || | ||| || || || Sbjct 10572225 AATTCCCTCCTTGTCCTGAATCTTTGCTTTTACATTGTCAATCGTATCAGAACTCTCAAC 10572166 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | ||||| || || || || | || || | ||| || ||||| Sbjct 10572165 TTCCAAGGTAATAGTCTTTCCTGTGAGGGTCTTCACAAAAATTTGCAT 10572118 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | || | |||| |||||| || || || ||| Sbjct 10571663 ATGCCACCCCTGAGACGAAGCACAAGGTGGAGGGTAGACTCTTTTTGAATGTTGTAGTCA 10571604 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||| ||||| |||||||| | |||||||| ||||| Sbjct 10571603 GCAAGGGTGCGACCATCTTCAAGTTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCAGGG 10571544 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || ||| || |||||| || | || || ||| Sbjct 10571543 GGGATCCCTTCTTTATCCTGGATCTTAGCCTTGACATTATCAATTGTGTCAGAGCTTTCA 10571484 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | ||||| | || |||||||| Sbjct 10571483 ACCTCAAGGGTGATTGTCTTGCCAGTAAGGGTTTTTACGAAGATCTGCAT 10571434 >seq9 Length=70713020 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| |||||||| | || | || | |||| |||||| ||| || |||||| Sbjct 66888418 ATCCCACCCCTAAGACGAAGGACAAGGTGGAGCGTAGACTCTTTCTGGATGTTGTAATCA 66888477 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||||||||| |||||||| | |||||||| || || Sbjct 66888478 GCGAGGGTCCGGCCATCTTCAAGTTGTTTACCTGCAAAGATAAGCCTCTGTTGGTCTGGA 66888537 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || |||||| || | ||| || ||| Sbjct 66888538 GGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATCGTATCAGAACTTTCC 66888597 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | |||||||||||| Sbjct 66888598 ACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 66888647 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| |||||||| | || | || | |||| |||||| ||| || ||||| Sbjct 66882264 ATCCCACCCCTAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCC 66882323 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | |||||||| |||||||| | |||||||| || ||| Sbjct 66882324 GCAAGAGTTCGGCCATCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGT 66882383 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || |||||| || | ||| || ||| Sbjct 66882384 GGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTATCGGAACTTTCC 66882443 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | ||||| | ||||||||||| Sbjct 66882444 ACCTCGAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACGAATATCTGCAT 66882493 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||| | ||| | ||| || |||||| || || | Sbjct 66887508 ACCACCACGAAGGCGAAGGACAAGATGCAGAGTGGACTCCTTCTGGATATTGTAGTCTGC 66887567 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| ||||| |||| ||||| || || ||||||||||| || ||||| || || || || Sbjct 66887568 TAAAGTTCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 66887627 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || || || || ||| ||| ||||| || | || || || || Sbjct 66887628 AATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATCGTGTCCGAGCTCTCCAC 66887687 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| ||||| || || || | ||||||||||| Sbjct 66887688 CTCCAGGGTGATGGTTTTCCCAGTCAAAGTCTTCACGAATATCTGCAT 66887735 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||| || | || || || | |||| |||||| |||||||||||| Sbjct 66881580 ATCCCTCCTCGAAGTCGGAGCACCAAGTGGAGGGTAGACTCTTTCTGGATATTATAATCT 66881639 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | |||| || | ||||| |||||||| || || ||||| ||||| ||| Sbjct 66881640 GCAAGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGT 66881699 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || ||| ||||||||| || | || || || Sbjct 66881700 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTGTCAGAACTCTCA 66881759 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||| || || || || | || || | ||| || ||||| Sbjct 66881760 ACTTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAAATTTGCAT 66881809 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || |||||||||| ||| || | |||| |||||||| || ||||||||||| | || Sbjct 65274275 ATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTT 65274216 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || || ||||| || || || || || || ||||| || | | Sbjct 65274215 TGCTGATCTGGGGGGATACCTTCCTTGTCCTGAATCTTTGCCTTCACATTGTCAATTGTA 65274156 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||| || || | || || ||||| ||||| ||||| |||| || |||||| Sbjct 65274155 TCCGAACTTTCCACCTCCAATGTGATTGTTTTCCCAGTCAATGTCTTAACGAAAATCTGC 65274096 Query 192535 AT 192536 || Sbjct 65274095 AT 65274094 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||||||| || || || ||||| | ||| | || || ||| ||||| || Sbjct 66887734 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCC 66887793 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | || || || ||||| || || ||||| || || || Sbjct 66887794 GCAAGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGA 66887853 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || ||||| ||| ||||| || | || || || Sbjct 66887854 GGAATCCCCTCCTTGTCCTGAATTTTCGCTTTAACATTGTCAATGGTGTCCGAGCTCTCG 66887913 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||||||||| || || |||| ||||||||||| Sbjct 66887914 ACCTCCAGTGTTATGGTTTTACCAGTCAAGGTCTTAACGAATATCTGCAT 66887963 >seq11 Length=62681010 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | |||||| | || | || | ||| | ||| ||| || ||||| ||||||| Sbjct 1163225 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGA-ATATTGTAATCAGC 1163283 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || | | |||| |||| ||||| |||||||| || || || || ||||| ||||| Sbjct 1163284 CAAAGTCCTTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGG 1163343 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| || || || || ||| || ||| || | ||| || || || Sbjct 1163344 AATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCAC 1163403 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||| || ||||| || || || || | || |||||||| Sbjct 1163404 TTCTAAAGTAATCGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 1163451 >seq13 Length=58321163 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || || || | || | ||| || ||||||||| ||| Sbjct 44437175 ATACCACCACGAAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTATAGTCA 44437234 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| ||| ||||||||||| || | |||||||| || || Sbjct 44437235 GCCAGGGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGG 44437294 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || ||||| || ||||| || | |||||| ||| Sbjct 44437295 GGGATTCCCTCCTTGTCCTGAATTTTTGCCTTAACATTGTCAATGGTATCTGAACTCTCT 44437354 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||| || ||||| || || |||| ||| || |||||| Sbjct 44437355 ACCTCCAATGTAATGGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCATT 44437405 Score = 96.9 bits (106), Expect = 7e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || | || | || ||||| | || | || || ||| || || ||| Sbjct 44437859 ATACCACCCCTCAATCGGAGGACCAAATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCA 44437918 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| ||||||||||||||||| | |||||||| || ||| Sbjct 44437919 GCAAGGGTACGGCCATCCTCCAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGT 44437978 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || | |||||||| || | ||| || ||| Sbjct 44437979 GGGATCCCTTCCTTGTCTTGGATCTTGGTCTTTACATTGTCGATGGTATCAGAACTTTCC 44438038 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 || || || || ||||| || ||||| | || || | || || ||||| | || ||| Sbjct 44438039 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCATCTATTTTGAA 44438098 Query 192547 AAA 192549 || Sbjct 44438099 TAA 44438101 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || | || | || ||||| | || | || || ||| || || ||| Sbjct 44437631 ATACCACCCCTCAATCGGAGGACCAAATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCA 44437690 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| |||||||||||||||||| | ||||| || || ||| Sbjct 44437691 GCAAGGGTACGGCCATCCTCCAGTTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGT 44437750 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || |||||||| || | ||| || ||| Sbjct 44437751 GGGATCCCTTCTTTGTCTTGGATCTTGGCCTTTACATTGTCGATGGTATCAGAACTTTCC 44437810 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || | || || | ||| || ||||| Sbjct 44437811 ACCTCAAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAAATTTGCAT 44437860 >seq6 Length=51074515 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||||| || || | |||| ||||||||||| ||||| ||||| || | Sbjct 42745384 GATATTATAATCAGCCAAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACG 42745325 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| |||||||| || ||||| || ||||| || || || || || || | Sbjct 42745324 CTGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGT 42745265 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || ||||| || || ||||| || || ||||| ||||| | ||| || || Sbjct 42745264 GTCGGAACTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTG 42745205 Query 192534 CAT 192536 ||| Sbjct 42745204 CAT 42745202 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| |||||| || |||||||||| || || | |||| ||||||||||| || Sbjct 42745626 GTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCG 42745567 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 |||||||| | || || ||||||||||| |||||||| ||||| || || || || Sbjct 42745566 GCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTA 42745507 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 ||||| || | ||| || ||| || || | || || ||||| || || || || Sbjct 42745506 ACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTC 42745447 Query 192520 TTAATAAATATCTGCAT 192536 || | ||| |||||||| Sbjct 42745446 TTGACAAAAATCTGCAT 42745430 >seq511 Length=6087 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || ||||| | ||| |||| || | ||| | ||| || ||| |||||||||| | Sbjct 481 CCTCCCCTAAGCCTTAACACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGCT 422 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| |||| ||| ||||||||||| || || ||||| |||||||| || Sbjct 421 AGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAGGG 362 Query 192430 ATTCCTTCTTTATCTTG 192446 || ||||||||||| || Sbjct 361 ATGCCTTCTTTATCCTG 345 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || |||||||| | ||| |||| || | ||| | ||| || ||| |||||||||| | Sbjct 5757 CCTCCTCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGCT 5698 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | ||| ||||||||||| || || ||||| |||||||| || Sbjct 5697 AGGGTTCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAGGG 5638 Query 192430 ATTCCTTCTTTATCTTG 192446 || || |||||||| || Sbjct 5637 ATGCCCTCTTTATCCTG 5621 >seq12 Length=35429946 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || ||||| | ||| |||| || | ||| | ||| || ||| |||||||||| | Sbjct 4807176 CCTCCCCTAAGCCTTAACACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGCT 4807235 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | ||| ||||||||||| || || ||||| |||||||| || Sbjct 4807236 AGGGTTCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAGGG 4807295 Query 192430 ATTCCTTCTTTATCTTG 192446 || || |||||||| || Sbjct 4807296 ATGCCCTCTTTATCCTG 4807312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984466957485900