Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 seq11 113 8e-20 seq9 109 1e-18 seq13 102 1e-16 seq3 91.5 3e-13 seq6 89.7 9e-13 seq511 86.0 1e-11 >seq2 Length=62769430 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || ||||| | ||||| ||| || ||||||||||| Sbjct 27609689 ATACCACCCCGAAGGCGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCG 27609630 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | | || || | |||||| ||||||||||| ||||| |||||||| ||| Sbjct 27609629 GCAAGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGT 27609570 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || || || ||| |||||| || ||||| || || Sbjct 27609569 GGGATTCCTTCTTTGTCCTGAATCTTGGCTTTCACATTATCAATGGTATCCGAACTCTCG 27609510 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || || || ||||| | ||||| | || || ||||| Sbjct 27609509 ACCTCCAAGGTGATTGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 27609460 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || ||||| | |||| ||| || ||| ||||| ||| Sbjct 10572119 ATACCACCACGAAGACGCAACACCAAATGGAGGGTAGACTCCTTTTGAATGTTATAGTCT 10572060 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| |||||||||||||| ||||| ||||| ||| Sbjct 10572059 GCAAGGGTTCTGCCATCTTCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCTGGT 10572000 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || || ||| || ||||| || || Sbjct 10571999 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTATCAATTGTATCAGAACTCTCC 10571940 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| |||||||| ||||| | ||||| | || |||||||| Sbjct 10571939 ACCTCTAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAGATCTGCAT 10571890 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||||||||||||||| || | |||||||||||||| || || |||||||| Sbjct 10571816 TCCTCCAGTTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCAGGAGGGATACCTTCTTTG 10571757 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || |||||| || || || || ||| ||||| || || || Sbjct 10571756 TCTTGGATCTTGGCCTTGACATTATCAATTGTGTCGGAGCTTTCCACTTCAAGGGTGATT 10571697 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | ||||| | ||||| ||||| Sbjct 10571696 GTCTTGCCAGTAAGGGTTTTGACAAATATTTGCAT 10571662 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| ||||| ||||| || | |||||||||||||| || || ||||||||| Sbjct 10571588 TCTTCAAGTTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCAGGGGGGATCCCTTCTTTA 10571529 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || ||| || |||||| || || || || ||| || || || || || Sbjct 10571528 TCCTGGATCTTAGCCTTGACATTATCAATTGTGTCAGAGCTTTCAACCTCAAGGGTGATT 10571469 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | ||||| | ||| |||||||| Sbjct 10571468 GTCTTGCCAGTAAGGGTTTTTACGAAGATCTGCAT 10571434 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | ||||| ||| || ||||||||||| | Sbjct 27610143 ACCACCGCGAAGGCGAAGGACAAGATGCAGAGTAGACTCCTTTTGGATATTATAATCAGC 27610084 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | | | || || | ||| || |||||||| || | || || ||||| ||||| Sbjct 27610083 CAATGTCCTGCCATCTTCAAGTTGCTTGCCAGCAAATATGAGCCTTTGCTGGTCTGGTGG 27610024 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || || ||||| || || ||||| ||| || Sbjct 27610023 GATCCCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCAATGGTGTCTGAACTTTCAAC 27609964 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || || || ||||| | || |||| || |||||||| Sbjct 27609963 CTCTAGAGTGATAGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 27609916 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || | |||||||| || ||||| ||||||||||||||||| || Sbjct 10549310 TGCTTACCAGCAAAGATAAGCCTCTGTTGATCTGGTGGGATTCCTTCTTTATCTTGGATC 10549251 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| || || || || ||| || || || || ||||| || || Sbjct 10549250 TTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCG 10549191 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | ||| || ||||| Sbjct 10549190 GTGAGGGTCTTGACGAAAATTTGCAT 10549165 >seq11 Length=62681010 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || | || | ||| | ||| || |||||| ||||| | Sbjct 1163225 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCC 1163284 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| | | | || |||| ||||| ||||||||||| || || || || || ||||| Sbjct 1163285 AAAGTCCTTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGA 1163344 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||||||||| || || || || ||| || ||| || ||||| || || ||| Sbjct 1163345 ATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACT 1163404 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| |||||| || ||||| || || || || | ||| |||||||| Sbjct 1163405 TCTAAAGTAATCGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 1163451 >seq9 Length=70713020 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | ||| | ||| || ||||| || |||| Sbjct 66887508 ACCACCACGAAGGCGAAGGACAAGATGCAGAGTGGACTCCTTCTGGATATTGTAGTCTGC 66887567 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| ||| | || ||||| || || |||||||| || || ||||| ||||| || || Sbjct 66887568 TAAAGTTCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 66887627 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || || || || ||| ||| ||||| || || || || || || Sbjct 66887628 AATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATCGTGTCCGAGCTCTCCAC 66887687 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||||||| ||||| || || || | |||||||||||| Sbjct 66887688 CTCCAGGGTGATGGTTTTCCCAGTCAAAGTCTTCACGAATATCTGCAT 66887735 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | || | || | |||| |||||| || || ||||| Sbjct 66882264 ATCCCACCCCTAAGACGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCC 66882323 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | |||||||| ||||| || | ||||||||||| ||| Sbjct 66882324 GCAAGAGTTCGGCCATCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGT 66882383 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || |||||| || ||||| || ||| Sbjct 66882384 GGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTATCGGAACTTTCC 66882443 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || ||||| | ||||| | |||||||||||| Sbjct 66882444 ACCTCGAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACGAATATCTGCAT 66882493 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | || | || | |||| |||||| || || ||||| Sbjct 66888418 ATCCCACCCCTAAGACGAAGGACAAGGTGGAGCGTAGACTCTTTCTGGATGTTGTAATCA 66888477 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||||||| ||||| || | ||||||||||| || Sbjct 66888478 GCGAGGGTCCGGCCATCTTCAAGTTGTTTACCTGCAAAGATAAGCCTCTGTTGGTCTGGA 66888537 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || |||||| || ||||| || ||| Sbjct 66888538 GGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATCGTATCAGAACTTTCC 66888597 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | ||||| | ||||||||||| Sbjct 66888598 ACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAATATCTGCAT 66888647 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| |||||| | || || || | |||| |||||| |||||||||||| Sbjct 66881580 ATCCCTCCTCGAAGTCGGAGCACCAAGTGGAGGGTAGACTCTTTCTGGATATTATAATCT 66881639 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | || || | ||||| ||||||||||| || ||||| || || ||| Sbjct 66881640 GCAAGTGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGT 66881699 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||||||||| || || || || || Sbjct 66881700 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTGTCAGAACTCTCA 66881759 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| || || || || | || || | || || ||||| Sbjct 66881760 ACTTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAAATTTGCAT 66881809 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || ||||| || ||||| | || | || || ||| ||||| || Sbjct 66881808 ATGCCACCACGGAGACGTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCC 66881867 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | || || ||||||||||| || ||||| ||||| ||| Sbjct 66881868 GCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGT 66881927 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || || |||||| || ||||| || || Sbjct 66881928 GGGATCCCTTCCTTATCCTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCC 66881987 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||| ||||| || || | ||||| | || |||||||| Sbjct 66881988 ACCTCCAACGTAATAGTTTTTCCGGTGAGGGTTTTTACAAAAATCTGCAT 66882037 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||| || || || ||||| | ||| | || || || ||||| || Sbjct 66887734 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCC 66887793 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | || || | || || || |||||||| || ||||| ||||| || Sbjct 66887794 GCAAGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGA 66887853 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| ||| ||||| || || || || || Sbjct 66887854 GGAATCCCCTCCTTGTCCTGAATTTTCGCTTTAACATTGTCAATGGTGTCCGAGCTCTCG 66887913 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || |||||||||||||| || || |||| |||||||||||| Sbjct 66887914 ACCTCCAGTGTTATGGTTTTACCAGTCAAGGTCTTAACGAATATCTGCAT 66887963 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || | || || ||| | || ||||| || || |||||||| || || ||| Sbjct 66881172 ATATTGTAGTCGGCTAGAGTTCGACCATCCTCCAACTGCTTCCCAGCAAATATCAACCTC 66881231 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || || || || || || || || ||| ||||| || || Sbjct 66881232 TGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTG 66881291 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| || || || || || || ||||| || || || || || | |||||||||| Sbjct 66881292 TCTGAGCTCTCCACCTCCAGGGTGATTGTTTTCCCGGTCAAGGTCTTCACGAATATCTGC 66881351 Query 172068 AT 172069 || Sbjct 66881352 AT 66881353 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| || ||||||||||| || ||||| ||||||||||| || || || || Sbjct 66888037 TCCTCGAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATACCCTCCTTG 66888096 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || || ||| || || ||||| || || || | ||||| Sbjct 66888097 TCTTGGATCTTGGCCTTCACGTTATCAATTGTGTCTGAACTCTCCACCTCCAATGTAATA 66888156 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || ||||| | || ||||||||| Sbjct 66888157 GTTTTTCCAGTCAAAGTTTTCACAAAAATCTGCATT 66888192 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||||||||| || ||||| | || | || || || ||||| ||| Sbjct 66881352 ATCCCTCCTCGAAGTCGTAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAGTCT 66881411 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | || || | || || || |||||||| || ||||| ||||| || Sbjct 66881412 GCAAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGA 66881471 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| ||| ||||| || || || || || Sbjct 66881472 GGAATCCCCTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAATGGTGTCCGAGCTCTCG 66881531 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||||||||| || || || || | |||||||||||| Sbjct 66881532 ACCTCCAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAATATCTGCAT 66881581 >seq13 Length=58321163 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || || | || | ||| || |||||||| || Sbjct 44437175 ATACCACCACGAAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATATTATAGTCA 44437234 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| ||| |||||||||||||| | ||||||||||| || Sbjct 44437235 GCCAGGGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGG 44437294 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || || || ||||| || ||||| || |||||||| ||| Sbjct 44437295 GGGATTCCCTCCTTGTCCTGAATTTTTGCCTTAACATTGTCAATGGTATCTGAACTCTCT 44437354 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | |||||||| || ||||| || || |||| || || |||||| Sbjct 44437355 ACCTCCAATGTAATGGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCATT 44437405 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| |||||||||||||| || | ||||||||||| ||||| || ||||| || Sbjct 44437934 TCCTCCAGCTGTTTACCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTG 44437993 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || | |||||||| || ||||| || ||| || || || || ||| Sbjct 44437994 TCTTGGATCTTGGTCTTTACATTGTCGATGGTATCAGAACTTTCCACCTCAAGGGTGATG 44438053 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | || || | ||| || ||||| Sbjct 44438054 GTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 44438088 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| || ||||||||||| | ||||| ||||| ||||| |||||||| ||| Sbjct 44436794 TCTTCAAGTTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGGATTCCTTCCTTA 44436853 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || |||||| || || ||||| || ||||| || || ||| Sbjct 44436854 TCCTGGATCTTGGCCTTAACATTATCAATCGTGTCTGAGCTCTCAACTTCCAGGGTGATG 44436913 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | || || | ||| || ||||| Sbjct 44436914 GTCTTTCCAGTCAGGGTCTTCACGAAAATTTGCAT 44436948 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||||||||||||||| || | ||||| ||||| ||||| || |||||||| Sbjct 44437706 TCCTCCAGTTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATCCCTTCTTTG 44437765 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || |||||||| || ||||| || ||| || || || || ||| Sbjct 44437766 TCTTGGATCTTGGCCTTTACATTGTCGATGGTATCAGAACTTTCCACCTCAAGGGTGATG 44437825 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || | || || | || || ||||| Sbjct 44437826 GTCTTCCCGGTGAGGGTCTTGACAAAAATTTGCAT 44437860 >seq3 Length=45765648 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 171851 AAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCG 171910 |||||| | || ||||| | ||| | |||||| |||||||||||| | | || | Sbjct 27760476 AAGTCGAAGAACCAAATGAAGAGTTGACTCTTTTTGAATATTATAATCAGTAAGAGTCCT 27760417 Query 171911 TTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT------CAGGTGGTAT 171964 | | || || | ||||| || |||||||||||||| || |||| ||| | || Sbjct 27760416 TCCATCCTCAAGTTGTTCTCCTGCAAAAATTAATCTTTGCTGGTTTGGGCAAGGGGAGAT 27760357 Query 171965 TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTC 172024 || ||||| || || ||||| | ||| ||| || ||||||| ||| || ||||| Sbjct 27760356 ACCCTCTTTTTCCTGAATTTTGTCTTTCACAATATCAATAGTATTTGAACTCTCAACTTC 27760297 Query 172025 TAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||| ||||| ||||| || || | | ||||| || || Sbjct 27760296 CAATGTAATTGTTTTTCCAGTAAAGGTCTGGACAAATATTTGGAT 27760252 >seq6 Length=51074515 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| | || | | | || ||||||||||| ||||| || || || | | Sbjct 42745383 ATATTATAATCAGCCAAGGTCCTCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGC 42745324 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||||||||| || ||||| || ||||| || || || || || || || Sbjct 42745323 TGTTGGTCAGGTGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTAACGTTGTCGATGGTG 42745264 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || ||||| || || ||||| || || ||||| ||||| | || || ||| Sbjct 42745263 TCGGAACTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTGACAAAGATTTGC 42745204 Query 172068 AT 172069 || Sbjct 42745203 AT 42745202 Score = 89.7 bits (98), Expect = 9e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| ||| |||||||| | |||| | | || ||||||||||| || Sbjct 42745626 GTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCG 42745567 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || | || || || |||||||| |||||||| ||||| || || || || Sbjct 42745566 GCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTA 42745507 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 ||||| || ||||| || ||| || || | || || ||||| || || || || Sbjct 42745506 ACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTC 42745447 Query 172053 TTAATGAATATCTGCAT 172069 || | || |||||||| Sbjct 42745446 TTGACAAAAATCTGCAT 42745430 >seq511 Length=6087 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | || || ||||| | ||| |||| || | ||| | ||| || || |||| Sbjct 489 TCATGGTTCCTCCCCTAAGCCTTAACACTAGGTGAAGAGTGGACTCCTTTTGGATGTTAT 430 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||| | || | ||| | || |||| ||| |||||||||||||| || ||||| || | Sbjct 429 AATCAGCTAGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGAT 370 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| || || ||||||||||| || Sbjct 369 CAGGAGGGATGCCTTCTTTATCCTG 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905124301117200