Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 141 3e-28 seq9 111 5e-19 seq3 107 6e-18 seq10 104 7e-17 >seq2 Length=62769430 Score = 141 bits (156), Expect = 3e-28 Identities = 363/543 (67%), Gaps = 16/543 (3%) Strand=Plus/Plus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | | || ||| || ||||||||||| | || || Sbjct 16911081 CCAGCAACATCAGGCCTATCAACTGTAACCTGCCGGTCAAACCTACCCGGCCGCAACAAA 16911140 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT-AGATTCGGTTTG 288935 || | || | | ||| | |||||| ||||||||||| |||||| | | | || Sbjct 16911141 GCGGCATCAAGAACATCCGGTCTGTTGGTTGCTGCCAA---AACAATGACACCAGAATTC 16911197 Query 288936 CTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | | |||||||||||| || || | ||||| | ||| || || || ||||||||| Sbjct 16911198 CCTGAAAATCCATCCATCTCAGTCAACAACTGATTGATTGTCTGCTCTCTCTCATCATTT 16911257 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATG 289053 |||| | | ||| | | ||| | | | |||||||||||||| || |||||| Sbjct 16911258 ---CCTCCTCCAAGACCAGCTCCTCTC---TGTCTCCCAACAGCATCAATCTCATCAATG 16911311 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 || | | || |||| || | | || | | ||||| || ||||| | |||||| Sbjct 16911312 AAGACGATGCAAGGAGCCTTGGATTTGGCCTTATCGAATAAGTCCCTTACTCTGGATGCA 16911371 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 || | ||||| ||| || ||||| |||||||| | | ||| | || | || Sbjct 16911372 CCTACTCCAACGAACAACTCCACAAACTCAGAAGCAGCG-CATGAGAAAAACGGAACCCC 16911430 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| ||||||||||| ||||||| || ||||| || || ||||| || || | || Sbjct 16911431 GGCTTCTCCTGCTACTGCTCTCGCCAATAGAGTCTTTCCAGTACCAGGAGGGCCAACCAA 16911490 Query 289233 TAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAA 289291 || ||| ||||| || | ||| || || || | || || || ||| |||| || | Sbjct 16911491 TA-AACAACCTTTCGGGATTTTAGCTCCTAAAGCTGTGTACTTGTCTGGGTTCTTCAAGA 16911549 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351 | || |||| || | ||||| ||||||||| ||| ||| ||||| |||| || | Sbjct 16911550 AATCGACAACCTCTTGGAGTTCCAATTTTGCCTGGTCAGCTCCCGCTACGTCAGAGAAGG 16911609 Query 289352 TAA 289354 ||| Sbjct 16911610 TAA 16911612 Score = 113 bits (124), Expect = 1e-19 Identities = 316/474 (67%), Gaps = 26/474 (5%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG---CTTAAATCCA 288945 || || |||||||| |||||||| | ||| | ||| |||| | || || ||| Sbjct 1667975 ATGTCAGCTCTGTTAGTTGCTGCAATTACGATGATAC---CGGTGTTACCCTCGAAACCA 1668031 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || |||| || ||||| ||||| || || |||||||| |||| Sbjct 1668032 TCCATTTCGGTCAAAAGCTGGTTAAGAGTTTGCTCTCTCTCATCATTC---CCTC----- 1668083 Query 289006 TCACCCGAATC-GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 |||| | | | |||| ||| | ||||| ||||||||||| || | || | | | Sbjct 1668084 -CACCAATACCAGTTCCTCTTTGTCGTCCAACGGCATCAATTTCATCCACAAAGACAATA 1668142 Query 289063 CACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 || || | ||| | | || ||| ||| | || | || || || || |||| || Sbjct 1668143 CAGGGGGCATTCTCCTTGGCCTTCTTGAAAAGA--TCACGAACTCGAGAAGCACCAACAC 1668200 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179 ||||| ||||||| ||||| |||||| |||| | | || | ||||| ||| ||||| Sbjct 1668201 CAACAAACATTTCAACAAACTCAGAACCGGA-AATGGAGAAGAATGGCACACCAGCTTCA 1668259 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || | |||| | || ||||| ||||| || |||||||| || || | ||||| Sbjct 1668260 CCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTTCCAGGAGGGCCAATGAGAAGAACA 1668319 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 || || || | ||||| | | || || | || || ||||||| || || ||| Sbjct 1668320 CCTTTAGGGATACGAGCCCCGACTGCGGTAAATCTTTCTGGCTTCTTTAAGAACTCCACA 1668379 Query 289300 ATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||| | ||| || | ||||| |||||| ||| || |||||| | || || Sbjct 1668380 ACCTCCATGAAG-TCCTGCTTTGCTTCATCAACTCCAGCAACATCATCGAATGT 1668432 Score = 100 bits (110), Expect = 8e-16 Identities = 270/407 (66%), Gaps = 7/407 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| | || | ||||||||||| ||||| |||||||| ||| Sbjct 61902953 AAATCCATCCATTTCTACTAGCAACTGATTAAGTGTACTTTCCCGCTCATCATTGCCACC 61902894 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 ||| || | | |||| | |||| | ||||||||||| |||||||| | Sbjct 61902893 A---GAAAAGCCTCCACGACCCCTTGCTCTACCTATTGCATCAATTTCATCAATGAATAC 61902837 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | || |||| | || || || | |||||| ||| || | || | |||| Sbjct 61902836 AATACTAGGAGCACACTGCCTAGCCTCTTGAAATAAGCTTCTCACTCTTGACGGCCCAAC 61902777 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 |||||| ||||||| | ||| || || | || | | || | ||| | ||| | || Sbjct 61902776 TCCAACAAACATTTCCATAAAATCGGATCCAGACA-TAGAGAGGAAAGGCACACCAGATT 61902718 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||| |||| ||||||||||| ||||| ||||| || || | | || Sbjct 61902717 CACCAGCAGTTGCCTTCGCAAGAAGTGTCTTCCCTGTGCCAGGAGGACCAACAAGAAGTG 61902658 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | || | || | || || || | ||| |||||||| ||| ||||||| || | Sbjct 61902657 CACCTCTGGGAATCTTAGCTCCTA-ATTCTTCATATTTCTTTGGGTTCTTTAAGAAGTGC 61902599 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||| || ||| | ||||||||||||||||| || ||||| Sbjct 61902598 ACAAACTCCATAATTTCTTGCTTTGCCTCATCACATCCAGCAACATC 61902552 >seq9 Length=70713020 Score = 111 bits (122), Expect = 5e-19 Identities = 336/509 (66%), Gaps = 20/509 (4%) Strand=Plus/Plus Query 288853 TCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCC 288912 ||||||||||| | | ||| || | || | | ||||| ||||| ||||||||| Sbjct 14510912 TCAAACCTACCGGGCCTCAATAAAGCCGCATCAAGAACATCGGGCCTGTTAGTTGCTGCC 14510971 Query 288913 AATACAACAATAGATTCGGTTTGCTT---AAATCCATCCATACTTGTTAAAATTTGATTA 288969 || |||| | | ||| | | |||||||||||| || | | ||||| Sbjct 14510972 AAAACAATGACAC---CGGAATTCCCCGAAAATCCATCCATCTCAGTCAGCAACTGATTG 14511028 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | ||| || || |||||||||||| |||| | | | || | |||||| | | | Sbjct 14511029 ATTGTCTGCTCTCTTTCATCATTT---CCTCCTCCA--AGCCCA---GCTCCTCTCTGTC 14511080 Query 289030 --CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||||||||||| || || |||||||| | | || || | || | | || || Sbjct 14511081 TCCCAACAGCATCGATCTCATCAATGAATACAATGCAAGGCGCTTTGGATTTTGCCTTTT 14511140 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 | || || || ||||| | || || || | ||||| ||| || ||||| || |||| Sbjct 14511141 CGAACAAATCCCTTACCCTCGACGCGCCTACTCCAACGAACAACTCCACAAACTCCGAAG 14511200 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | | | ||| | || | || ||||| ||||| || | ||||||| | || Sbjct 14511201 CTG-CGCATGAGAAAAAGGGCACCCCGGCTTCCCCTGCCACGGATCTCGCCAATGGAGTT 14511259 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGA 289265 || || || ||||| || || |||||| ||| ||||| |||| ||| || || || Sbjct 14511260 TTTCCGGTACCAGGAGGGCCAACTAATA-AACAACCTTTCGGTATTTTAGCTCCTAAAGC 14511318 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | | || || || ||| |||| || || || |||| ||| | ||||| | ||||||| Sbjct 14511319 CGTGTACTTGTCTGGGTTCTTCAAGAAATCGACAACTTCTTGGAGTTCCAACTTTGCCTG 14511378 Query 289326 ATCACATCCTGCTACATCAGCAAAAGTAA 289354 ||| ||| ||||| |||||||| |||| Sbjct 14511379 GTCAGCTCCAGCTACGTCAGCAAAGGTAA 14511407 >seq3 Length=45765648 Score = 107 bits (118), Expect = 6e-18 Identities = 223/328 (68%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||| || || ||||| ||| | | || | ||| || || ||||| Sbjct 316201 ATCATATTTAACCATGATATCCTCCATTGCCTTCACAAGTCGCCTCTGTATGTACCCAGT 316260 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | ||| || || || || ||||| || ||||| | | ||| ||||| |||||||| || Sbjct 316261 TTCAGAAGTCTTAACTGCAGTATCTATGAGACCTTCTCTACCTCCCATGGCATGGAAAAA 316320 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | |||| || | ||| | | | | ||| |||| || |||||||| |||||| Sbjct 316321 GAATTCTTGTGGGGTCAACCCACGCAGATAAGAGTTCTCCACAAAACCACGACTCTCGGG 316380 Query 302733 CG---AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGA 302788 |||| || ||| ||||| || |||| || | | ||| | | || ||||||| Sbjct 316381 GCCAAAATCATC---CTTTGTAAAATGGGGCAAAGTAC-GATCTACGAATCCATATGGGA 316436 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAAT 302848 | |||||||| |||||||||||||| || | || | |||| || || || || | Sbjct 316437 TTCGCTTTCCCTCAACGTTCTGCTGACCAACACAAGCTGTCATTTGGGATATGTTAATGA 316496 Query 302849 CACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||| ||||| || || ||| | ||||| Sbjct 316497 AACTTCCCTTTGATCCTGCAGTAACCAT 316524 >seq10 Length=62175169 Score = 104 bits (114), Expect = 7e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| || ||||| ||||| |||||| | |||| ||| | ||||| ||| | | Sbjct 62035870 ACAAACGTGGACTCTGTACGCATCACTTTGGTCAAATAATCTTTCCTTGAGGAAATGGGC 62035929 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| |||| |||||| ||||| || ||||| || || ||||||||||||||||| || Sbjct 62035930 AGCACCATGTGCAATCATGCAATCTCGTTCCATCTCTCCAAAACGAAGACCACCATCACG 62035989 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | ||||| ||||| || | || ||| | | |||||| || ||| Sbjct 62035990 AGAACGTCCCTCTGCAGGTTGCCTCGTTAGAATTTGAACAGGACCCCGACCACGTGAATG 62036049 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 |||||| | ||||||||||| || || ||||| ||| ||| || | ||| || Sbjct 62036050 GATCTTATCGTCGACCATATGCTTTAGTCGTTGGTAATATGTGGGTCCCAAGAATAT 62036106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471798101176458