Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 176 6e-38 seq11 172 7e-37 >seq1 Length=55868233 Score = 176 bits (194), Expect = 6e-38 Identities = 217/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||||||||| ||||| || ||||| || | | |||| || | |||| Sbjct 54862445 GAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCCGCGATTTGG 54862386 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| || |||| || || || |||||||| ||| |||||||| Sbjct 54862385 ACCTCTTTCATGAAGCGAACGGCGAGATTTTCTAGGACGATGCCATCGGATGCGGCGAAG 54862326 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCA--GTGGA 869810 || || ||||| || |||| |||||||| |||||| || | || ||| ||||| Sbjct 54862325 AAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTTGCCAGTGTGGA 54862266 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | |||| ||| || || |||||||| ||||| | ||||| ||||| || |||| Sbjct 54862265 AG--ATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTCTTGT 54862208 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||| ||||||| || |||| |||| ||||| | | ||||||| ||||| Sbjct 54862207 ACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAAGCGGTCCGGGTT 54862153 Score = 132 bits (146), Expect = 6e-25 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| || | |||||| || || ||||||||||| |||||||| Sbjct 54862685 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAAAAT 54862626 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 ||||| || ||| || || |||| | ||| |||||||| | ||| ||| | Sbjct 54862625 ATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCC------G 54862572 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| |||| ||||| ||||| ||||| ||| |||||||||| || | ||| Sbjct 54862571 TCGATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCG 54862512 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 | |||||| ||| |||||||| | || || | ||| || |||| ||||| Sbjct 54862511 TGGAAGAGGCGGTTCTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAG 54862459 >seq11 Length=62681010 Score = 172 bits (190), Expect = 7e-37 Identities = 229/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || ||||| ||||| ||||| || ||||| || | | |||| | | ||| Sbjct 8942020 GAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGG 8941961 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||||||||| | || |||||||| || ||||| ||| |||||||||| Sbjct 8941960 ACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAA 8941901 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| | || |||||| |||| ||| || |||| | |||||| |||| Sbjct 8941900 AAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTTCCCAGT-GACG 8941842 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | |||| || || || ||||| |||||||| | ||| || ||||| || ||||| Sbjct 8941841 AAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 8941782 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930 ||| |||||||||| |||| |||| || || | ||| || |||| ||||| || Sbjct 8941781 CATTTCCCATACTTCTGGGTATTGGATCGGAAACA-TACAGAATCGGTCTGGGTTCGCGG 8941723 Query 869931 GCAACAGGGGTTC 869943 || ||| || || Sbjct 8941722 CCAGCAGTGGCTC 8941710 Score = 132 bits (146), Expect = 6e-25 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| | || | ||| || | |||||| ||||| |||||||| || ||||||||| Sbjct 8942260 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 8942201 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || || || ||| ||||| |||| | ||| ||||| || || || ||| | Sbjct 8942200 ATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCC------G 8942147 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| ||||| ||||| ||||| ||||| ||| |||||||||| ||||||||| Sbjct 8942146 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 8942087 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || || || ||| |||||| | | || || | || || |||| ||||| Sbjct 8942086 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAG 8942034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107054345117778