Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 8e-16 seq6 98.7 8e-16 seq10 95.1 1e-14 seq9 95.1 1e-14 seq13 93.3 3e-14 seq2 86.0 5e-12 seq4 82.4 6e-11 >seq11 Length=62681010 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| ||||| || || ||||| | ||| |||| Sbjct 1163451 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCG 1163392 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| ||||||| ||||||||||| | || ||||| Sbjct 1163391 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 1163332 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| | |||| ||| || ||||||||||| |||| || || |||| |||||||| Sbjct 1163331 CAAAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGAAGGACTTTGGCTGATTACAAT 1163272 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||| || || || Sbjct 1163271 ATTCAAAAGGAGTCCAC 1163255 >seq6 Length=51074515 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| ||||||||||| ||||| ||| ||||| ||| | | Sbjct 42745202 ATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTCC 42745261 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| |||||| | || || ||| Sbjct 42745262 GACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGCATCCCACCTGACCAA 42745321 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || || ||||| |||| |||| || || |||| ||||| || Sbjct 42745322 CAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTATAAT 42745381 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| ||||| || | ||| | || || || || || || || Sbjct 42745382 ATCCAAAAGGAATCCACCCTTCACCTTGTTTTGAGGCTTCGTGGAGG 42745428 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||||| ||||||||||| || ||| | || || | Sbjct 42745430 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 42745489 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| || || ||||| | || ||||| Sbjct 42745490 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 42745549 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | ||| || ||||| |||| |||| || || |||| ||||| ||| Sbjct 42745550 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 42745609 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| ||||| ||||| Sbjct 42745610 ATTCAGAAAGAGTCTAC 42745626 >seq10 Length=62175169 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || || |||||||| || | || |||| | | Sbjct 51861133 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 51861192 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||||| ||||||||||| | || ||||| Sbjct 51861193 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAG 51861252 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| | |||| || || |||||| |||| |||| || || |||| |||||||| Sbjct 51861253 CAAAGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTTTGGCTGATTACAAT 51861312 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || ||||| || Sbjct 51861313 ATTCAGAAGGAATCCAC 51861329 >seq9 Length=70713020 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| ||||||||||| ||||| ||| ||||| ||| | Sbjct 65273182 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGCTCC 65273241 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || || ||| ||||| |||||| | || || || Sbjct 65273242 GACACCATCGATAATGTGAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGACCAG 65273301 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | || || |||||||| ||||| | | | || |||| ||||||||| Sbjct 65273302 CAGCGTCTTATCTTCGCCGGAAAACAGCTCGAGGACGGCCGTACCTTGGCCGATTACAAC 65273361 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || ||||| || | ||| | || ||| | || || ||||| Sbjct 65273362 ATCCAGAAGGAATCCACCCTCCACCTTGTCTTACGTCTTCGTGGGGG 65273408 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || |||||| | || ||||| || || ||| |||| ||| | | Sbjct 66882493 ATGCAGATATTCGTGAAAACTCTTACTGGCAAGACTATCACCCTCGAGGTGGAAAGTTCC 66882434 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| ||||| ||||| | || || ||| Sbjct 66882433 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 66882374 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||||||||| || |||| | |||| | |||||||||||| Sbjct 66882373 CAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAAC 66882314 Query 110453 ATTCAAAAAGAATCTAC 110469 || || ||||| ||||| Sbjct 66882313 ATCCAGAAAGAGTCTAC 66882297 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA-ACG-GAGC-CT 110329 ||||| || || |||||||||||||||||||| ||||| ||| ||||| || |||| || Sbjct 65273410 ATGCAGATCTTCGTCAAAACTTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGCTCT 65273469 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | ||||| || ||| ||||| |||||| | || || Sbjct 65273470 GAC---ACCATCGATAATGTAAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGAC 65273526 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || |||||||| ||||| | | | || |||| |||||| Sbjct 65273527 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTCGAGGACGGCCGTACCTTGGCCGATTAC 65273586 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || ||||| || Sbjct 65273587 AACATCCAGAAGGAATCCAC 65273606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| |||||||| ||||| | || ||||| ||||| ||| |||| ||| | Sbjct 66888647 ATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 66888588 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| ||||| ||||| | || || ||| Sbjct 66888587 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAA 66888528 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| |||||||| || || |||| | | || | || ||||||||| Sbjct 66888527 CAGAGGCTTATCTTTGCAGGTAAACAACTTGAAGATGGCCGGACCCTCGCTGATTACAAC 66888468 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 || || ||||| |||||| | ||| Sbjct 66888467 ATCCAGAAAGAGTCTACGCTCCAC 66888444 >seq13 Length=58321163 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | ||||| || ||||| || | || |||| | Sbjct 44437632 ATGCAAATTTTTGTCAAGACCCTCACCGGAAAGACCATCACATTGGAGGTGGAGAGTTCT 44437573 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| |||||| | ||| || || Sbjct 44437572 GATACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 44437513 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | || ||||| || || ||||||| | | ||| |||| ||||||||| Sbjct 44437512 CAAAGGCTGATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCACATTGGCTGATTACAAC 44437453 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || || || || | ||| ||||| | | || || || |||| Sbjct 44437452 ATCCAGAAGGAGTCCACACTCCACTTGGTGCTTCGCCTCCGTGGAGGAA 44437404 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | ||||| || ||||| ||| | || ||| | Sbjct 44437860 ATGCAAATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTTGAGGTGGAAAGTTCT 44437801 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | ||||| ||||| ||||||||||| | || || || Sbjct 44437800 GATACCATCGACAATGTAAAGGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGACCAG 44437741 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| |||||||| |||||||||| | | || | || || |||||| Sbjct 44437740 CAGAGGCTTATCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTTGCTGACTACAAC 44437681 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || ||||| || Sbjct 44437680 ATCCAGAAGGAATCCAC 44437664 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | || ||||| ||||| ||| | || ||| | Sbjct 44438088 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGTTCT 44438029 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | ||||| ||||| ||||| ||||| | || || ||| Sbjct 44438028 GATACCATCGACAATGTAAAGACCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 44437969 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||||||||||||||||| | | || | || || |||||| Sbjct 44437968 CAGAGGCTTATCTTTGCTGGTAAACAGCTGGAGGATGGCCGTACCCTTGCTGACTACAAC 44437909 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || ||||| || Sbjct 44437908 ATCCAGAAGGAATCCAC 44437892 >seq2 Length=62769430 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | ||||| |||||||| ||| | ||| ||| | Sbjct 10550077 ATGCAGATTTTTGTGAAGACTCTTACCGGGAAAACCATCACCTTGGAAGTTGAGAGCTCC 10550136 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || || || ||||| ||||| | || || ||| Sbjct 10550137 GACACTATTGACAATGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCTCCAGACCAA 10550196 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| |||||||| ||||| ||||||| ||| ||| | || || |||||| Sbjct 10550197 CAGAGGTTGATTTTCGCGGGTAAGCAGCTTGAGGATGGCAGGACACTTGCAGACTACAAC 10550256 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||| || || || Sbjct 10550257 ATTCAAAAGGAGTCGAC 10550273 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | || ||||| ||||| ||| |||| |||| | Sbjct 27609004 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGTTCA 27609063 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| || || ||||| | || |||||| Sbjct 27609064 GACACCATTGATAATGTGAAGGCTAAGATCCAAGATAAGGAAGGGATCCCACCGGATCAG 27609123 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || ||||| || ||||||| | | || | || || |||||| Sbjct 27609124 CAGAGGCTTATATTTGCTGGCAAACAACTTGAGGATGGCCGCACGCTAGCCGACTACAAC 27609183 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| |||||||| || | ||| |||| | |||| || || || Sbjct 27609184 ATTCAGAAAGAATCCACCCTTCACTTGGTTCTTCGACTTCGTGGCGG 27609230 >seq4 Length=62178258 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || ||||| ||||||| || ||||| ||| | || ||| || Sbjct 4510544 AATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACCATAACCCTAGAGGTCGAGTCTTC 4510603 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || ||| ||||| |||||||||||| | ||| ||| || Sbjct 4510604 CGACACAATCGATAATGTCAAAGCCAAGATCCAAGACAAAGAAGGCATACCCCCGGACCA 4510663 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | || || | || ||||| || || || || | | | || | || || ||||| Sbjct 4510664 ACAACGCCTCATCTTCGCCGGTAAGCAACTCGAAGACGGCCGCACCTTAGCCGACTACAA 4510723 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| ||||| ||||| || Sbjct 4510724 CATCCAAAAGGAATCCAC 4510741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412836397421762