Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11 179 6e-39 seq1 161 2e-33 >seq11 Length=62681010 Score = 179 bits (198), Expect = 6e-39 Identities = 210/284 (74%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | || | ||| || | |||||| |||||||||||||| || ||||||||| Sbjct 8942260 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 8942201 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || ||| ||||| ||| | ||| ||||| ||||| || ||| || Sbjct 8942200 ATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTC---- 8942145 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| ||||| |||||||| || ||||| ||| | |||||||| ||||||||| Sbjct 8942144 --GATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 8942087 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || || || ||| ||| || | | || || | ||| || |||| ||||| ||| Sbjct 8942086 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 8942027 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAA 794663 |||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct 8942026 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAA 8941983 Score = 150 bits (166), Expect = 3e-30 Identities = 195/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| |||||||| || | || ||||||||| || ||||| Sbjct 8941975 GCCTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCA 8941916 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||||||||||||| ||||| | || ||||| |||| ||| || |||| Sbjct 8941915 TCGGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGA 8941856 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||||| ||| | |||| || ||||| ||||| ||||||||||| || || Sbjct 8941855 GTTTCCCAGT-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGC 8941797 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||||| || |||||||| ||||||| | |||| |||| || |||| | || || Sbjct 8941796 TTCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATACAGAATCG 8941737 Query 796389 ATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | |||||| || ||||| ||||| Sbjct 8941736 GTCTGGGTTCGCGGCCAGCAGTGGCTC 8941710 >seq1 Length=55868233 Score = 161 bits (178), Expect = 2e-33 Identities = 232/325 (71%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 |||||| || ||| |||||| | ||| | |||| | || ||||| | ||||||| Sbjct 54862725 ACCTTCATCTCGAGAGATCAACTTGTTTGAGAAAGTTTAT-CCAGGCATTAACCCGCGCT 54862667 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 | || | |||||| || |||||||||||||| |||||||| ||||| || ||| || | Sbjct 54862666 TTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGA 54862607 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||| | ||| |||||||||| || ||| || |||||| |||| |||| Sbjct 54862606 AAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTC------GATCCATTTCAAAGCCC 54862553 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || || ||||| ||| | |||||||| || | ||| | |||||| ||| ||| | Sbjct 54862552 AATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTCTTTT 54862493 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || | || || | || || |||| |||||| || |||| |||||||| || | Sbjct 54862492 CGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATACATCTCAGAGTGGATATTCT 54862433 Query 794639 CGATGGCGATCTGGAAGCCATAAAA 794663 |||||||||| ||||| |||||||| Sbjct 54862432 CGATGGCGATTTGGAATCCATAAAA 54862408 Score = 147 bits (162), Expect = 3e-29 Identities = 192/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | | ||||||||| ||||||||||| |||| || || || |||||||| Sbjct 54862400 GCCTCCGCGATTTGGACCTCTTTCATGAAGCGAACGGCGAGATTTTCTAGGACGATGCCA 54862341 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||| ||||| ||||| || |||| ||||| || |||||| || | || Sbjct 54862340 TCGGATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGA 54862281 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| |||| ||| || || |||||||| |||||||| ||||| Sbjct 54862280 TTTTGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCT 54862221 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 ||||| || |||||||| ||||||||| || |||| |||| ||||||| ||||| Sbjct 54862220 TCGGCTTTCTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAAGCGG 54862161 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | ||||| | ||||| |||||| Sbjct 54862160 TCCGGGTTAGAGGCTAGCAACGGCTC 54862135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916136408703926