Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq13 89.7 4e-13 seq11 89.7 4e-13 seq9 89.7 4e-13 seq6 84.2 2e-11 >seq2 Length=62769430 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || | ||||| || || |||||| | ||| ||| | Sbjct 10572118 ATGCAAATTTTTGTGAAGACCCTCACAGGAAAGACTATTACCTTGGAAGTTGAGAGTTCT 10572177 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | |||||| ||||||| || || || || | ||| ||||||| Sbjct 10572178 GATACGATTGACAATGTAAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCGGATCAG 10572237 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || ||| ||||||||| ||| | || |||||||| Sbjct 10572238 CAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAGGACGGTCGAACTCTAGCTGACTACAAT 10572297 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || || ||||||||||| |||| Sbjct 10572298 ATCCAGAAGGAGTCTACTCTGCA 10572320 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| ||||| || | || ||||| ||||| ||| | || ||| ||| Sbjct 10549165 ATGCAAATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAAAGCTC- 10549223 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||| ||||||||||| | || ||||| Sbjct 10549224 CGACACCATCGATAATGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCCACCAGATCA 10549283 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||| | ||| ||||| ||||| ||||| | ||| | || |||||||| Sbjct 10549284 ACAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAGGATGGTCGTACACTTGCTGACTACAA 10549343 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| |||||||| || | ||| |||| Sbjct 10549344 CATTCAGAAGGAGTCCACCCTCCACTTGGT 10549373 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||| | || || |||||||| ||| | ||| ||| ||| Sbjct 10550077 ATGCAGATTTTTGTGAAGACTCTTACCGGGAAAACCATCACCTTGGAAGTTGAGAGCTC- 10550135 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || || || || || ||||| | || || || Sbjct 10550136 CGACACTATTGACAATGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCTCCAGACCA 10550195 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| | |||| |||||||| ||||| ||||| | || ||| | || |||||||| Sbjct 10550196 ACAGAGGTTGATTTTCGCGGGTAAGCAGCTTGAGGATGGCAGGACACTTGCAGACTACAA 10550255 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||||||||||||| || Sbjct 10550256 CATTCAAAAGGAGTCGAC 10550273 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| | || || |||||||| || | || |||| | Sbjct 10571890 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTAGAGGTGGAGAGTTCT 10571949 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || |||||| || || || ||| | || || ||| Sbjct 10571950 GATACAATTGATAACGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 10572009 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| || |||||||| || || | || ||| | || ||||| ||| Sbjct 10572010 CAGAGGTTAATTTTTGCTGGGAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAAC 10572069 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||||||||||| | || |||||||| Sbjct 10572070 ATTCAAAAGGAGTCTACCCTCCATTTGGTGTTG 10572102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || ||||| ||||| ||| |||| |||| | Sbjct 27609004 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGTTCA 27609063 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| ||||| ||||| | || ||||||| Sbjct 27609064 GACACCATTGATAATGTGAAGGCTAAGATCCAAGATAAGGAAGGGATCCCACCGGATCAG 27609123 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || ||||| || ||||| | | || | || ||||||||| Sbjct 27609124 CAGAGGCTTATATTTGCTGGCAAACAACTTGAGGATGGCCGCACGCTAGCCGACTACAAC 27609183 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || || || || | ||| |||| Sbjct 27609184 ATTCAGAAAGAATCCACCCTTCACTTGGT 27609212 >seq13 Length=58321163 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || | || || || ||||| ||| | || ||| | Sbjct 44437860 ATGCAAATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTTGAGGTGGAAAGTTCT 44437801 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | ||||| ||||| || |||||||| | || || ||| Sbjct 44437800 GATACCATCGACAATGTAAAGGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGACCAG 44437741 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| |||||||| |||||||| | | || | || ||||||||| Sbjct 44437740 CAGAGGCTTATCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTTGCTGACTACAAC 44437681 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||| || || Sbjct 44437680 ATCCAGAAGGAATCCAC 44437664 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| || | || ||||| ||||| ||| | || ||| | Sbjct 44438088 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGTTCT 44438029 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | ||||| ||||| || || ||||| | || || || Sbjct 44438028 GATACCATCGACAATGTAAAGACCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 44437969 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| ||||||||||||||||| | | || | || ||||||||| Sbjct 44437968 CAGAGGCTTATCTTTGCTGGTAAACAGCTGGAGGATGGCCGTACCCTTGCTGACTACAAC 44437909 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||| || || Sbjct 44437908 ATCCAGAAGGAATCCAC 44437892 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || ||||| || || || |||||||| | || ||| | Sbjct 44437405 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACCATTACATTGGAGGTAGAGAGTTC 44437346 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || ||| ||| || || || || | ||| || || Sbjct 44437345 AGATACCATTGACAATGTTAAGGCAAAAATTCAGGACAAGGAGGGAATCCCCCCAGACCA 44437286 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || |||| ||| ||||| || |||||||| | | || |||| ||||| || Sbjct 44437285 ACAGAGGCTGATTTTTGCTGGTAAGCAACTGGAGGATGGCCGTACCCTGGCTGACTATAA 44437226 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 44437225 TATCCAGAAGGAGTCCACCCTCCACTTGGTG 44437195 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || | || || || ||||| || | || |||| | Sbjct 44437632 ATGCAAATTTTTGTCAAGACCCTCACCGGAAAGACCATCACATTGGAGGTGGAGAGTTCT 44437573 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || |||||| | ||| || ||| Sbjct 44437572 GATACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 44437513 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || || | || ||||| || || ||||| | | ||| |||| || |||||| Sbjct 44437512 CAAAGGCTGATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCACATTGGCTGATTACAAC 44437453 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 44437452 ATCCAGAAGGAGTCCACACTCCACTTGGTG 44437423 >seq11 Length=62681010 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| ||||| || || || || ||||| | ||| |||| ||| | Sbjct 1163451 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCG 1163392 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| |||||| || |||||||| | || ||||| Sbjct 1163391 -GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 1163333 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| ||| || ||||||||||| || | | || |||| || ||||| Sbjct 1163332 GCAAAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGAAGGACTTTGGCTGATTACAA 1163273 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 1163272 TATTCAAAAGGAGTCCAC 1163255 >seq9 Length=70713020 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| | || || |||||||| || | || |||| | Sbjct 66888419 ATGCAGATATTTGTAAAAACCCTCACCGGAAAAACCATCACTTTGGAGGTGGAGAGTTCT 66888360 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || |||||| || || || || | || |||||| Sbjct 66888359 GATACCATTGATAATGTTAAGGCCAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 66888300 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| || || ||||| ||||| | | ||| | ||||| || ||| Sbjct 66888299 CAGAGGCTGATTTTTGCCGGAAAGCAGCTCGAGGATGGGAGGACACTAGCGGATTATAAC 66888240 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || ||||||||||| || |||| ||||| || || |||| || |||| Sbjct 66888239 ATCCAAAAGGAGTCAACCCTGCATTTGGTGCTGCGACTGCGTGGTGGAA 66888191 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || |||||||||||||| ||||| ||||| ||| ||||| ||| ||| Sbjct 65273410 ATGCAGATCTTCGTCAAAACTTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGCT-C 65273468 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | ||||| || ||| || || |||||| | || || || Sbjct 65273469 TGACACCATCGATAATGTAAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGACCA 65273528 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || |||||||| ||||||| | || |||| || ||||| Sbjct 65273529 GCAGCGTCTCATCTTCGCCGGCAAACAGCTCGAGGACGGCCGTACCTTGGCCGATTACAA 65273588 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||| || || Sbjct 65273589 CATCCAGAAGGAATCCAC 65273606 >seq6 Length=51074515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA-AACGGAGGCTGG 107614 ||||| ||||||||||| ||||| || |||||||| || ||| | || | | ||| Sbjct 42745430 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCT-C 42745488 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || || ||||||| ||||| ||||| | || ||||| Sbjct 42745489 CGATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 42745548 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || ||||| |||| || | | || |||| || || || Sbjct 42745549 GCAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAA 42745608 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || |||||||| Sbjct 42745609 CATTCAGAAAGAGTCTAC 42745626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398871773404426