Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2 105 1e-17 seq9 102 1e-16 seq3 86.0 1e-11 >seq2 Length=62769430 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || ||||| ||||| || | || || || | | Sbjct 27609461 TGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATCACCTTGGAGGTCGAGAGTTCGG 27609520 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || || |||||||| || ||||| || |||| Sbjct 27609521 ATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAAC 27609580 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || |||||| | || ||| ||||| | | |||||||||| Sbjct 27609581 AAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATAATA 27609640 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || || || ||| ||||||| || Sbjct 27609641 TCCAGAAGGAGTCTACTCTCCATTTGGT 27609668 >seq9 Length=70713020 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| || |||||| | || || || | | Sbjct 66881808 TGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTG 66881749 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||||||| ||| || || || ||||| |||||||| ||||| | Sbjct 66881748 ACACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGC 66881689 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| || ||||| | || ||| ||| || | |||||||||||| Sbjct 66881688 AGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATA 66881629 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| || || |||| || || | ||| | ||||||| Sbjct 66881628 TCCAGAAAGAGTCTACCCTCCACTTGGTGCTCCGACTTCGAGGAGG 66881583 >seq3 Length=45765648 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 |||||||| | | || || || |||||||||||||| | || || || | || Sbjct 27760255 CAAATATTTGTCCAGACCTTTACTGGAAAAACAATTACATTGGAAGTTGAGAGTTCAAAT 27760314 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCAT-TCCACCCGATCAA-- 146150 |||||| | | ||| ||| | ||||| || ||||| || || ||| | | ||| Sbjct 27760315 ACTATTGATATTGTGAAAGACAAAATTCAGGAAAAAGAGGGTATCTCCCCTTGCCCAAAC 27760374 Query 146151 ---CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTAT 146207 |||||| | ||||||||||| ||||| | || ||| || || | || |||||| Sbjct 27760375 CAGCAAAGATTAATTTTTGCAGGAGAACAACTTGAGGATGGAAGGACTCTTACTGATTAT 27760434 Query 146208 AATATACAAAAAGAATCGACTATCCATTTAGT 146239 ||||| |||||||| || ||| | ||||| || Sbjct 27760435 AATATTCAAAAAGAGTCAACTCTTCATTTGGT 27760466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786156238799280