Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 2e-12 seq7 84.2 3e-11 >seq3 Length=45765648 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 317935 AATTTGTCTGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 317876 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 317875 GTTCCTCAATCATTTG 317860 >seq7 Length=60982465 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| | | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 18637097 AATTTGTCAGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 18637038 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 18637037 GTTCCTCAATCATTTG 18637022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635169390329520