Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 3e-13 >seq2 Length=62769430 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/140 (74%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC----- 81697 ||||||| | |||||||| ||||| || |||| |||||||| || ||| || ||| Sbjct 10572318 CAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGAGTTCGACCGTCCTCCAACTGCTT 10572259 Query 81698 ------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 |||||| | || || ||| | || | ||| | ||||| || ||||||||||| Sbjct 10572258 CCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTTGC 10572199 Query 81752 TTTTATATTTTCAATCGTAT 81771 ||||| ||| |||||||||| Sbjct 10572198 TTTTACATTGTCAATCGTAT 10572179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903399523410240