Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 8e-15 seq7 87.8 4e-12 >seq3 Length=45765648 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| ||||| |||| ||||| || ||| | ||||| || |||||||||| Sbjct 318045 GACATTTAAATGATGGAGATTATGTTCTTTTTAATCGTCAACCCAGTCTTCATAAAATGT 317986 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 | || |||| |||| | || | ||||| | | || ||||| ||||| | Sbjct 317985 CAATCATGGGCCATAGAATCCGA--ATTATGCCATACTCTACGTTTCGTCTAAATTTGTC 317928 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | | || || ||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 317927 TGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCA 317868 Query 305485 ATCA 305488 |||| Sbjct 317867 ATCA 317864 >seq7 Length=60982465 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 304937 CAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAA 304996 ||||| | || |||||||| |||||| |||| |||| | | |||| | ||| Sbjct 18637736 CAGGCTACACAGAGATCTGGGAGACCTATAAAATCTATTTGTAGTAGGCTTAAGGCGAAA 18637677 Query 304997 GAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTA 305056 ||||| || ||| | ||||| | ||||| ||| | ||||| ||| || ||| ||| Sbjct 18637676 GAGGGCCGGATTAGGGGTAACTTGATGGGGAAAAGGGTTGACTTTTCAGCTCGAACGGTA 18637617 Query 305057 ATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTT 305114 || ||||| ||| | | || | | || ||||| | ||||| || ||| | ||||||| Sbjct 18637616 ATTACACCAGATCCAAATATCAATATTGATGAACTTGGAGTACC--TTGGAGTATTGCTT 18637559 Query 305115 TAAAACTAACATTTCCAGA 305133 |||| || |||| |||||| Sbjct 18637558 TAAATCTTACATATCCAGA 18637540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186797076955674