Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq11 111 1e-19 seq10 89.7 5e-13 seq9 89.7 5e-13 seq2 87.8 2e-12 >seq11 Length=62681010 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| |||||||| ||| || ||| || |||||||||||||| |||| Sbjct 1163940 TTGACTCCTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCGAGCTGTTTTCCGG 1163999 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| |||||||| || |||||||| |||||||| ||||| ||||| |||| Sbjct 1164000 CGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATTTTGGCCTTCA 1164059 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || |||| ||| || |||| || | ||| || || || ||||| | Sbjct 1164060 CGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGTGTGATCGTCTTGCCGGTTAGAGTCT 1164119 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 1164120 TAACGAAGATCTGCAT 1164135 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || |||||||||||| || |||||| |||||||| ||||| |||| Sbjct 1163712 TTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCTTCGAGTTGTTTTCCGG 1163771 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| ||||| || || ||||| || |||||||| || || Sbjct 1163772 CGAAGATGAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTC 1163814 >seq10 Length=62175169 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||| ||| || ||| || ||||||||||||||| |||| Sbjct 51860870 GACTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCATCTTCGAGCTGTTTTCCGGCG 51860811 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||| ||||| || || ||||| || || ||||| || | Sbjct 51860810 AAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATTTTCGCCTTAACG 51860751 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||| ||||||| || | || || || ||||| || || Sbjct 51860750 TTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTA 51860691 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 51860690 ACGAAGATCTGCAT 51860677 >seq9 Length=70713020 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||| ||| || |||||| || ||||||||||| |||| Sbjct 65273375 GATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGGCG 65273316 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || |||||||| || || |||||| |||| Sbjct 65273315 AAGATAAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACA 65273256 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| ||| ||||||| || | || || || || | ||||| Sbjct 65273255 TTATCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAGGTTTTG 65273196 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 65273195 ACGAAGATCTGCAT 65273182 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCGGA 131988 |||||||| || |||||||| || | || | || || |||||| ||||||||||||| Sbjct 66882300 GACTCTTTCTGGATGTTGTAATC-CGCAAGAGTTCGGCCATCTTCAAGCTGTTTACCGGC 66882358 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 | |||| || | |||||| ||||| || || ||||| || || || || || | Sbjct 66882359 AAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGAC 66882418 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | ||||||| ||||| |||| || | || || ||||| |||||||| Sbjct 66882419 ATTATCAATTGTATCGGAACTTTCCACCTCGAGGGTGATAGTCTTGCCAGTAAGAGTTTT 66882478 Query 132109 TATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 66882479 CACGAATATCTGCATG 66882494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||| ||| || |||||| || ||||||||||| |||| Sbjct 65273147 GATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTTCCGGCG 65273088 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || |||||||| || || |||||| |||| Sbjct 65273087 AAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTCACA 65273028 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| || |||| || | || || || || || ||||| Sbjct 65273027 TTGTCGATGGTGTCAGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTTTTG 65272968 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 65272967 ACGAAGATCTGCAT 65272954 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||| ||| || |||||| || ||||||||||| |||| Sbjct 65273603 GATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGTTTGCCGGCG 65273544 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || |||||||| || || |||||| || | Sbjct 65273543 AAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTTACA 65273484 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| ||||||| || | || || || || | |||||| Sbjct 65273483 TTATCGATGGTGTCAGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAAGTTTTG 65273424 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 65273423 ACGAAGATCTGCAT 65273410 >seq2 Length=62769430 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | ||||| ||||||||||| ||||| | ||| | | Sbjct 10572104 CGCAACACCAAATGGAGGGTAGACTCCTTTTGAATGTTATAGTCTGCAAGGGTTCTGCCA 10572045 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| || | | | |||| | ||| || ||||| || ||||| || || Sbjct 10572044 TCTTCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTG 10571985 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || | | || | ||||| | |||||| || | || | Sbjct 10571984 TCCTGAATCTTGGCCTTAACGTTATCAATTGTATCAGAACTCTCCACCTCTAAAGTGATG 10571925 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| ||||| || ||||||| || ||||||||| Sbjct 10571924 GTTTTTCCAGTGAGCGTTTTTACAAAGATCTGCATG 10571889 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || |||||||||||||| | ||||| ||| || Sbjct 10549373 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTACGACCATCCTCT 10549314 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||| ||||| | | |||| || | |||||||||||| || || ||||||||||| Sbjct 10549313 AGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCTGGTGGGATTCCTTCTTTATC 10549258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||||||||||||||| | ||| || |||||| || || ||||||| | Sbjct 10571627 GACTCTTTTTGAATGTTGTAGTCAGCAAGGGTGCGACCATCTTCAAGTTGCTTACCGGCA 10571568 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| || | |||||| || || || || ||||||||||| Sbjct 10571567 AAGATAAGCCTCTGTTGGTCAGGGGGGATCCCTTCTTTATC 10571527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605039800240