Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 2e-16
seq9 89.7 4e-13
seq2 82.4 6e-11
>seq6
Length=51074515
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| |||||||| || || ||||| ||||| || || ||| |||| ||| | |
Sbjct 42745430 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 42745489
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | | || || ||| ||| || || ||||| | || ||||||
Sbjct 42745490 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 42745549
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|||||||| || | ||| ||||||||||| |||||| | ||| ||| ||||| |||
Sbjct 42745550 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 42745609
Query 106440 ATACAAAAAGAATCTACACTACA 106462
|| || ||||| ||||| || ||
Sbjct 42745610 ATTCAGAAAGAGTCTACCCTTCA 42745632
>seq9
Length=70713020
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
|||||||| ||||| ||||| | ||||| |||||||| ||| | || |||| | |
Sbjct 66888875 ATGCAAATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGCTCC 66888816
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| || | | | || || ||||| ||||||||||| | || || |||
Sbjct 66888815 GATACTATCGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGGATTCCTCCAGACCAA 66888756
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||||||||||| | ||| || |||||| | || ||| |||| | | ||| ||||||
Sbjct 66888755 CAAAGGCTTATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTGCCGACTACAAC 66888696
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| ||||| || || || || || ||||
Sbjct 66888695 ATCCAAAAGGAGTCCACCCTCCACCTAGT 66888667
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| ||||| ||||| ||||||||||| || || || || |||| |||
Sbjct 65274094 ATGCAGATTTTCGTTAAGACATTGACTGGGAAAACAATCACATTGGAGGTGGAAAGTTCG 65274153
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | | ||||| ||| ||| ||||| ||||| | ||| |||||
Sbjct 65274154 GATACAATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAAGGTATCCCCCCAGATCAG 65274213
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|||||||| || | ||| ||||| ||||| || ||| | ||| | | ||||| |||
Sbjct 65274214 CAAAGGCTCATCTTTGCTGGCAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAAC 65274273
Query 106440 ATACAAAAAGAATCTACACTACA 106462
|| || ||||| || || || ||
Sbjct 65274274 ATTCAGAAAGAGTCCACCCTTCA 65274296
>seq2
Length=62769430
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/211 (69%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCCG 106317
|||||||| ||||| ||||| | ||||| ||||| || ||| |||| ||| ||
Sbjct 27609460 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATCACCTTGGAGGTCGAGAGTTCG 27609519
Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377
| || | ||| | |||||| || ||| ||||||||||| | || || |
Sbjct 27609520 G--ATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACC 27609577
Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437
||||||| | |||| ||| || |||||| | |||||| | |||| | | |||||| |
Sbjct 27609578 AACAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATA 27609637
Query 106438 ACATACAAAAAGAATCTACACTACATTTAGT 106468
| || || || || ||||| || ||||| ||
Sbjct 27609638 ATATCCAGAAGGAGTCTACTCTCCATTTGGT 27609668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402324529892672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |