Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11 302 6e-76 seq1 300 2e-75 >seq11 Length=62681010 Score = 302 bits (334), Expect = 6e-76 Identities = 412/562 (73%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACC-AGC 1455773 ||||| |||||| || ||||| |||| || ||| |||| || |||| |||| || Sbjct 8941710 GAGCCACTGCTGGCCGCGAACCCAGACCGATTCTGTA-TGTTTCCGATCCAATACCCAGA 8941768 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 | |||||||||||||| | |||| |||| || || ||||||||||| ||||| ||||| Sbjct 8941769 AG-TATGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGAT 8941826 Query 1455834 CTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 || |||| | ||| |||||| | || | || ||| |||| ||| ||||| | Sbjct 8941827 CTGTCTTCCGATCTTCGTC-ACTGGGAAACTCTCACCGCCGATGAGCACCACTTCATTAG 8941885 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||||| |||||||||| |||||||| ||||||||| || |||||||| || | | Sbjct 8941886 TCACGTTCTCGCCTTTT-TCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTC 8941944 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||||||||||||| | | ||||| ||| ||||| || ||||| ||||| | Sbjct 8941945 GGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTA 8942004 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 ||||||| |||||||| || | ||| ||||| |||| || ||| | || || | | Sbjct 8942005 TCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCG 8942064 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 || ||| ||| || || ||||||||||| |||||||||| ||| ||||| |||| Sbjct 8942065 ATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCG 8942124 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 | ||||| ||||| |||||| || ||| || ||||| ||||| ||| | ||| Sbjct 8942125 AGTGGGCTATGAAATGGATC------GACGGCGGAGAAACTTTCGCCGAACGGTTAATCG 8942178 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| || || ||||||||||| || |||||||| ||||| |||||| | | Sbjct 8942179 CTTTTGCTTGCGTAGAAGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAA 8942238 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | ||| | || | |||||||| Sbjct 8942239 AAAAGAGGGGGTTAATGCCCGG 8942260 >seq1 Length=55868233 Score = 300 bits (332), Expect = 2e-75 Identities = 405/559 (72%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||| |||| | ||||||| ||||||| | ||||||| |||| |||| | | Sbjct 54862135 GAGCCGTTGCTAGCCTCTAACCCGGACCGCTTCTGCATGTTCCCAATCCAATACCCACAG 54862194 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 ||||||||||||||| | |||| |||| ||||| |||||||| |||||||| || || || Sbjct 54862195 ATATGGGAAATGTACAAGAAAG-CCGAAGCCTCTTTTTGGACTGCCGAGGAAGTTGATCT 54862253 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | |||| |||||| || | || |||||| ||||| ||||||| || Sbjct 54862254 CTCTTCCGATCTTCCACACTGGCAAAATCTTAACGCCGACGAACGCCACTTCATCAGTCA 54862313 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||||| ||||| || |||||| |||||||||||| || || || |||| |||| Sbjct 54862314 TGTCCTTGCCTTCTT-CGCCGCATCCGATGGCATCGTCCTAGAAAATCTCGCCGTTCGCT 54862372 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||||||||||||| | | ||||| ||| ||||| || ||||| |||||||||| Sbjct 54862373 TCATGAAAGAGGTCCAAATCGCGGAGGCGCGTGCATTTTATGGATTCCAAATCGCCATCG 54862432 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | || ||||||||||| | || ||||| |||| || || | || || | || Sbjct 54862433 AGAATATCCACTCTGAGATGTATAGTCTCCTCCTCGAAACTTATATTAAAGATTCCACCG 54862492 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 | ||| ||| |||||| | ||| | || |||||||||| ||| ||||| ||||| | Sbjct 54862493 AAAAGAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGATT 54862552 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCT 1456194 |||| |||| |||||| || ||| ||| | |||||||| ||| | ||| | Sbjct 54862553 GGGCTTTGAAATGGATC------GACGGCGGCGAAGCTTTTGCCGAACGGTTAATCGCTT 54862606 Query 1456195 TTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | || |||| || ||||| |||||||| ||||||||||| || || |||||| | || | Sbjct 54862607 TCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGGTTAAAAA 54862666 Query 1456254 AGCGCGGCCTCATGCCCGG 1456272 ||||||| | ||||| || Sbjct 54862667 AGCGCGGGTTAATGCCTGG 54862685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177711468799508