Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11 174 1e-38 seq1 150 1e-31 >seq11 Length=62681010 Score = 174 bits (192), Expect = 1e-38 Identities = 396/586 (68%), Gaps = 16/586 (3%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| || ||||| | || ||||| |||||||||| ||||| | ||||| |||| Sbjct 8941747 TGTTTCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 8941806 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAG-CACATTGGATTGCATTAAAACC 43824 |||| ||||| ||||| ||| || || || ||| | ||| | ||| | | ||| Sbjct 8941807 GGACCGCAGAGGAAGTCGATCTGTCTTCCGATCTTCGTCAC-TGGGAA---ACTCTCACC 8941862 Query 43825 AC--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 | | || | || || || | ||| | || ||||| || || ||| || ||| Sbjct 8941863 GCCGATGAGCACCACTTCATTAGTCACGTTCTCGCCTTTTTCGCCGCCTCCGATGGCATA 8941922 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 ||| ||| || | | | |||||| | |||| || || | | || || || | Sbjct 8941923 GTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCT 8941982 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 |||||||| || ||||| || || |||||||| || || || ||||||||||| || | Sbjct 8941983 TTTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTC 8942042 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || ||||| |||||| | || ||| | || | || || || || || || Sbjct 8942043 GAGACTTACATAAAAGATTCCGATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTG 8942102 Query 44063 CC---TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119 || || | |||| ||||| || ||||| | |||||||| | || || Sbjct 8942103 CCGTGTGTGGCTAAA---AAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAACT 8942159 Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179 || | ||||| | |||| ||||| || ||||| || || || || ||| |||| Sbjct 8942160 TTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAAGGGATCTTTTTCTCCGGAA-GTTT 8942218 Query 44180 GCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||||||||||||||| || | || || ||||| || || || || ||||| || Sbjct 8942219 CTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACGA 8942278 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||||| || |||||||| | || |||||||| ||||||||| Sbjct 8942279 GTTAATCTCACGAGATGAAGGTCTCCACTGCGATTTCGCTTGCTTG 8942324 >seq1 Length=55868233 Score = 150 bits (166), Expect = 1e-31 Identities = 388/583 (67%), Gaps = 10/583 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | |||||| |||||||||| ||||| | || || |||| Sbjct 54862172 TGTTCCCAATCCAATACCCACAGATATGGGAAATGTACAAGAAAGCCGAAGCCTCTTTTT 54862231 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGCATTAAAACCA 43825 |||| || || ||||||||| | || || | |||| ||| | |||| || Sbjct 54862232 GGACTGCCGAGGAAGTTGATCTCTCTTCCGATCTTCCACACTGGCAAAATCTTAACGCCG 54862291 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | ||| || || || | || | || || || || || ||| || || ||| Sbjct 54862292 -ACGAACGCCACTTCATCAGTCATGTCCTTGCCTTCTTCGCCGCATCCGATGGCATCGTC 54862350 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 |||||| | | ||| || | |||| || ||| | | || || || ||| Sbjct 54862351 CTAGAAAATCTCGCCGTTCGCTTCATGAAAGAGGTCCAAATCGCGGAGGCGCGTGCATTT 54862410 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 ||||| || ||||| ||||| || ||||| || || || ||||| ||||| || | || Sbjct 54862411 TATGGATTCCAAATCGCCATCGAGAATATCCACTCTGAGATGTATAGTCTCCTCCTCGAA 54862470 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC- 44064 || || || |||||| ||| ||| | || | || | || | ||||| || || Sbjct 54862471 ACTTATATTAAAGATTCCACCGAAAAGAACCGCCTCTTCCACGCTACTGAAACGGTGCCG 54862530 Query 44065 TGCGAT--TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 |||| |||| ||||| || ||||| | |||||||| | || ||||| Sbjct 54862531 TGCGTGGCTAAA---AAAGCCGATTGGGCTTTGAAATGGATCGACGGCGGCGAAGCTTTT 54862587 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 | ||||| | |||| || || || |||||||| || || || || |||| | Sbjct 54862588 GCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCA-GTTTCTG 54862646 Query 44183 -GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 || |||||||||||||| || || || || |||||||| | || || ||||| |||| Sbjct 54862647 TGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATAAACTTTCTCAAACAAGTT 54862706 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || ||| |||||||| | |||||||| |||||||||||| Sbjct 54862707 GATCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTTGCTTG 54862749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450991309170