Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq8 104 2e-17 seq6 104 2e-17 seq1 104 2e-17 seq11 98.7 8e-16 seq2 91.5 1e-13 >seq10 Length=62175169 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | || |||||||||||| | || || || || || || ||||| ||| | Sbjct 51861131 CCACCACGAAGCCTCAATACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 51861072 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| ||||| ||||| ||||| | ||||| | || || || || || Sbjct 51861071 AAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGG 51861012 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| || | | | || | ||||| | | ||| ||| Sbjct 51861011 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCGACT 51860952 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | |||||| | ||||| ||||| ||||| || ||||| ||||| Sbjct 51860951 TCCAAAGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 51860905 >seq8 Length=57128820 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 38526342 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCCTCGAGCTGCTTGCCG 38526283 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| |||||||| || || || | ||||| || || ||||||| ||| Sbjct 38526282 GCAAAGATGAGGCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTG 38526223 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||||| ||||| ||||| | || ||||| || ||| Sbjct 38526222 ACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 38526163 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 38526162 TTGACGAAGATTTGCAT 38526146 >seq6 Length=51074515 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || || || ||| | | | || |||||||||||||||| || Sbjct 42745170 GTGGATTCTTTCTGGATGTTATAATCGGCAAGGGTCCGACCGTCTTCGAGCTGTTTGCCA 42745111 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||||||||| || || || || | || || || || ||||||| || Sbjct 42745110 GCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTG 42745051 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| || || || ||||| | ||||| || || ||| Sbjct 42745050 ACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTTATGGTCTTGCCGGTAAGGGTT 42744991 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 42744990 TTCACAAAGATCTGCAT 42744974 >seq1 Length=55868233 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| ||||||||||||| || ||| Sbjct 19916789 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTGCTTCCCG 19916848 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || |||||||| || || || | ||||| || || ||||||| || Sbjct 19916849 GCGAAGATAAGGCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 19916908 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | || ||||| |||| ||||| | || |||||||| ||| Sbjct 19916909 ACGTTGTCGATTGTATCGGAGGACTCAACCTCTAAGGTTATGGTCTTCCCCGTCAGGGTT 19916968 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 19916969 TTGACGAAGATCTGCAT 19916985 >seq11 Length=62681010 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || |||||||| || | || | || | || || || || || || ||||||||| | Sbjct 1163681 CCGCCGCGCAAACGAAGGACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCC 1163740 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||||||||| ||||| |||||| | |||||||| || || || || || Sbjct 1163741 AAGGTACGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 1163800 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| || | | | || | ||||| | | || || Sbjct 1163801 ATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTGTCGATCGTGTCGGAGCTCTCGACC 1163860 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||| |||| |||||||| ||||||||||| Sbjct 1163861 TCGAGAGTGATTGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 1163907 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || |||||||| || | || | || | || || || ||||| || ||||| ||| | Sbjct 1163909 CCACCGCGCAAACGGAGGACGAGGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCGGCC 1163968 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||||||||||||||| |||||| | || |||||||| || || || || Sbjct 1163969 AAGGTCCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 1164028 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||| ||| |||| | | || | ||||| | | || || Sbjct 1164029 ATGCCTTCCTTATCTTGGATTTTGGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCGACC 1164088 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || ||||| || || ||||| ||||| Sbjct 1164089 TCGAGTGTGATCGTCTTGCCGGTTAGAGTCTTAACGAAGATCTGCAT 1164135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | |||| ||||||| ||||| || ||| Sbjct 3842815 GTGGATTCCTTCTGGATATTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCG 3842874 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || || |||||||| || || | || || || || ||||||| ||| Sbjct 3842875 GCGAAGATAAGGCGTTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTG 3842934 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || ||||| | ||| ||||| || ||| Sbjct 3842935 ACATTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTTATGGTTTTCCCCGTTAGGGTT 3842994 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 3842995 TTGACGAAGATCTGCAT 3843011 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTC 27097 |||| ||| | || || || || || |||||||| ||| || | || ||| |||| || Sbjct 1163471 ACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTC-CGCCCGTCCTC 1163529 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||| || || |||||| | |||||||| || || || ||||| | || || || || Sbjct 1163530 GAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTG 1163589 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| ||| ||||| | | || | ||||| | | || || || ||||| || | || Sbjct 1163590 GATTTTGGCTTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGAGTGATCGTCTT 1163649 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||||||||| Sbjct 1163650 TCCGGTAAGCGTCTTAACGAAGATTTGCAT 1163679 >seq2 Length=62769430 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||||| ||||| || | ||||| || ||||| |||||||||||| | Sbjct 27609914 CCACCACGCAGCCGCAACACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCC 27609855 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||||||||| || || || | ||||| | || || || || || Sbjct 27609854 AATGTCCTACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGGGGG 27609795 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || |||||| |||| | || | || || | |||||| Sbjct 27609794 ATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCGGAACTTTCAACC 27609735 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | || || || ||||| || |||||||| |||||| Sbjct 27609734 TCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTTACAAAGATCTGCATA 27609687 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||||||||| |||||||| | | |||| | ||||| || || |||||| Sbjct 10571630 GTAGACTCTTTTTGAATGTTGTAGTCAGCAAGGGTGCGACCATCTTCAAGTTGCTTACCG 10571571 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | |||||| || || || | || |||||||| |||||| || Sbjct 10571570 GCAAAGATAAGCCTCTGTTGGTCAGGGGGGATCCCTTCTTTATCCTGGATCTTAGCCTTG 10571511 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| || || || || | ||||| || || ||| Sbjct 10571510 ACATTATCAATTGTGTCAGAGCTTTCAACCTCAAGGGTGATTGTCTTGCCAGTAAGGGTT 10571451 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 10571450 TTTACGAAGATCTGCAT 10571434 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||||||| | || || || ||||| || ||||| || | Sbjct 10549619 CCTCCACGAAGGCGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCC 10549560 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| || || |||||||| | || || | ||| || || || || Sbjct 10549559 AGGGTACGGCCATCTTCTAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGG 10549500 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||||| || | | || | ||||| | | ||| || Sbjct 10549499 ATCCCTTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTTTCCACC 10549440 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| ||||| || || || || ||||||||||||||| Sbjct 10549439 TCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTAACAAAGATTTGCATA 10549392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929045029808