Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 100 4e-16 seq3 96.9 4e-15 seq9 93.3 5e-14 seq11 91.5 2e-13 >seq2 Length=62769430 Score = 100 bits (110), Expect = 4e-16 Identities = 303/461 (66%), Gaps = 8/461 (2%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | | ||||| || ||||| || | || || || | | || || Sbjct 1667968 ATCAAGAATGTCAGCTCTGTTAGTTGCTGCAATTACGATGATACCGGTGTTACCCTCGAA 1668027 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| ||||| | | || |||| ||||| |||||||||||||| || Sbjct 1668028 ACCATCCATTTCGGTCAAAAGCTGGTTAAGAGTTTGCTCTCTCTCATCATTCCCTCCACC 1668087 Query 11602 ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG 11661 | ||||| | | ||| || || |||||||| ||||| | ||||||||||| || Sbjct 1668088 AATACCAGTTCCTCTTTGTCGTCCAACGGCATCAATTTCATCCACAAAGACAATACAGGG 1668147 Query 11662 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 ||| || ||| | | || ||||| ||||| | ||||| ||||||||||| Sbjct 1668148 GGCATTCTCCTTGGCCTTCTTGAAAAGATCACGAACTCGAGAAGCACCAACACCAACAAA 1668207 Query 11722 CATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCG 11779 ||| || ||||| | | | || | || || |||||| ||| | |||||| || Sbjct 1668208 CATTTCAACAAACTCAGAACCGGA--AATGGAGAAGAATGGCACACCAGCTTCACCGGCA 1668265 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || || |||||||| || || || || |||||| | ||| Sbjct 1668266 ATTGCCTTAGCAAGAAGAGTCTTTCCGGTTCCAGGAGGGCCAATGAGAAGAACACCTTTA 1668325 Query 11840 GGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT- 11897 ||||| | | | | ||| | || |||| || || | ||| | || ||||||| || Sbjct 1668326 GGGATACGAGCCCCGACTGCGGTAA-ATCTTTCTGGCTTCTTTAAGAACTCCACAACCTC 1668384 Query 11898 CTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 | | |||| | |||| || | |||| || |||||||| Sbjct 1668385 CATGAAGTCCTGCTTT-GCTTCATCAACTCCAGCAACATCA 1668424 Score = 100 bits (110), Expect = 4e-16 Identities = 246/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| | |||||| || | | ||| ||||||| | |||| | || || || Sbjct 16911114 CGGTCAAACCTACCCGGCCGCAACAAAGCGGCATCAAGAACATCCGGTCTGTTGGTTGCT 16911173 Query 11510 GCAATAACCACAATGCCAGTCT-CATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 || | ||| | | |||| | | || ||| ||||||||||| || | || ||||| Sbjct 16911174 GCCAAAACAATGACACCAGAATTCCCTGA-AAATCCATCCATCTCAGTCAACAACTGATT 16911232 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 ||||| || ||||||||||||||| || | |||||| | | || | || || Sbjct 16911233 GATTGTCTGCTCTCTCTCATCATTTCCTCCTCCAAGACCAGCTCCTCTCTGTCTCCCAAC 16911292 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGATTTCAA 11684 ||||||||||||||||||||||| || || || ||| ||| ||| | || | Sbjct 16911293 AGCATCAATCTCATCAATGAAGACGATGCAAGGAGCCTTGGATTT----GGCCTTATCGA 16911348 Query 11685 AGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744 | | || | || || ||||| || ||||| |||| ||||||||| | | |||| Sbjct 16911349 ATAAGTCCCTTACTCTGGATGCACCTACTCCAACGAACAACTCCACAAACTCAGAAGCAG 16911408 Query 11745 AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| || || || || | ||| || || | |||| || | || ||||||| Sbjct 16911409 CGCATGAGAAAAACGGAACCCCGGCTTCTCCTGCTACTGCTCTCGCCAATAGAGTCTTTC 16911468 Query 11805 CCGTACCTGG 11814 | ||||| || Sbjct 16911469 CAGTACCAGG 16911478 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || ||||||||||| || || || | || ||| ||||| | ||| Sbjct 29134739 TGAGGCCTTGGAGTCCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGA 29134680 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| || || | | ||||||||||||| ||| || || || | || Sbjct 29134679 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCA 29134620 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| ||||||| ||| || |||| || | | || | || | | | ||||| Sbjct 29134619 ACCCTCATTAACATGTGCTGAGGCCTTTCTAT-AACCTTCCCTTGAACTTTCAAGAGATA 29134561 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | |||| |||||||||| ||||||||| | | ||| |||| || Sbjct 29134560 AGACCTCTCCAGGGTTTTGAAGCCAAAGTAATCGTAGTCAAAGTCACG 29134513 >seq3 Length=45765648 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || ||||||||||| || || || | || ||| | ||| | ||| Sbjct 6820268 TGAGGCCTTGGAGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGA 6820327 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| || || | | ||||||||||||| | | || || || | ||| Sbjct 6820328 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCA 6820387 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| ||||||| || || |||| || | | || | || | || |||| | Sbjct 6820388 ACCCTCATTAACATGTGTTGGGGCCTTTCTAT-AACCTTCCCTTGA-ACTTTCAAGAGGT 6820445 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | ||||||||||||||| |||||| ||| || | ||| ||||||| Sbjct 6820446 AGGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCG 6820494 >seq9 Length=70713020 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/202 (71%), Gaps = 14/202 (7%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || || || ||||| ||||| || ||||| ||||||||| || Sbjct 14510998 AAATCCATCCATCTCAGTCAGCAACTGATTGATTGTCTGCTCTCTTTCATCATTTCCT-- 14511055 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | ||||| | | || | || || ||||| |||||||||||||| ||||| Sbjct 14511056 CCTCCAAGCCCAGCTCCTCTCTGTCTCCCAACAGCATCGATCTCATCAATGAATACAATG 14511115 Query 11657 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 || || | |||||| || |||| || | ||| | ||||| || || | Sbjct 14511116 CAAGGCGCTTTGGATTTT-----GCCTTTTCGAACAAATCCCTTACCCTCGACGCGCCTA 14511170 Query 11712 CACCAACAAACATCTCCACAAA 11733 | ||||| |||| ||||||||| Sbjct 14511171 CTCCAACGAACAACTCCACAAA 14511192 >seq11 Length=62681010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||||||||| |||||||| || || | || |||||||| || || ||||| | || Sbjct 8942306 GTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGCATTAACCC 8942247 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||| || |||||| | || || ||||| |||||||| ||||| || || || || Sbjct 8942246 CCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCTTCTACGCA 8942187 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTG 122848 ||||| || | | ||||||||||| | || | | || | ||||||||| | Sbjct 8942186 AGCAAAAGCGATTAACCGTTCGGCGAA----AGTTTCTCCGCCGTCGATCCATTTCATAG 8942131 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| | || || || | | ||| || || || | |||||| Sbjct 8942130 CCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGC 8942088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023882686400