Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq3 98.7 1e-15 seq12 91.5 2e-13 >seq2 Length=62769430 Score = 131 bits (144), Expect = 2e-25 Identities = 251/365 (69%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | | | ||| |||||| || ||| | | || || || || Sbjct 1667938 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 1667997 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || || | ||||| || | | || ||||||||||| || |||||||| ||||||| Sbjct 1667998 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 1668057 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9705 |||||| || | ||||||||| || | ||||| | | ||| ||| ||||| Sbjct 1668058 AGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 1668117 Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGAT 9764 |||||| ||||| | ||||| || || || ||| | | | | ||| ||| |||| Sbjct 1668118 ATCAATTTCATCCACAAAGACAATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-AGAT 1668176 Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824 | || || || || || |||||||||||||| || ||||| | | ||||| || Sbjct 1668177 CACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCGGAA-ATG 1668235 Query 9825 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883 | || ||| || ||| || |||||| ||||| || || ||||||||||| || || Sbjct 1668236 GAGAAGAATGGCACACCAGCTTCACCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTT 1668295 Query 9884 CCTGG 9888 || || Sbjct 1668296 CCAGG 1668300 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199 |||| |||| | ||| ||||| |||||||||| |||| | ||||| | | | | Sbjct 29134516 GACTTTGACTACGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 29134575 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || || || |||| || ||| ||||||| ||| | || || | || ||||| Sbjct 29134576 CAAGGGAAGGTT-ATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAATTCA 29134634 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 | ||| ||||||||||||| | | || || ||| |||||| ||| | ||||| Sbjct 29134635 TAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTCAC 29134694 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || ||||||||||| || ||||| || ||| Sbjct 29134695 TCATGCTTCTCCCACTCTTTTCAATGCTGGGACTCCAAGGCCTCAA 29134740 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 105128 GTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT 105187 ||||| ||| ||| |||| ||| || |||| | |||||||| |||| ||||||||| Sbjct 29136287 GTTACTGAAATTGTAACCAGAAATCTTAACAAAATTATTGATGTTAATTACTACCCCGTT 29136346 Query 105188 GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTC 105247 || ||||| | ||| ||| || | || | ||||||||| | || ||||||||||| Sbjct 29136347 GAAACTGCCAAAAGATCAAATTTGCGTCATAGGCCAATTGGTATTGGAGTTCAGGGTCTT 29136406 Query 105248 GCGGATGTATTCATTCTTTGTCGCCA-CGCATTTGATTC 105285 || || ||||| |||| | | || || |||||||| Sbjct 29136407 GCAGACACATTCA-TCTTACTTGGCATGGCCTTTGATTC 29136444 >seq3 Length=45765648 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGC 104198 |||| |||| || |||||||||| ||||||||||||||| | ||| |||| || | Sbjct 6820491 GACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTGAAAGT- 6820433 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 || | || || || |||| || || ||||||| ||| | || || | || |||| Sbjct 6820432 TCAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAATTC 6820374 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 || | | ||||||||||||| | | || || ||| |||||| ||| | ||| | Sbjct 6820373 ATAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTTA 6820314 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || ||||||||||| || ||||| || ||| Sbjct 6820313 CTCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCAA 6820267 >seq12 Length=35429946 Score = 91.5 bits (100), Expect = 2e-13 Identities = 327/501 (65%), Gaps = 18/501 (4%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | || || | ||| | ||| ||| || || ||| | ||| || || || Sbjct 7032962 ATCAAATCTTCCAGGCCTAAGCAACGCAGAATCCAGAATTTCAGGCCTATTAGTAGCAGC 7032903 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 ||||||| || || || | | | |||||||||||| || ||||| || || || | Sbjct 7032902 AATGACAATAACTCCAGTATTACCAGTAAAACCATCCATTTCAGTCAACAGCTGATTCAA 7032843 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCAC 9702 |||||| |||| |||||||||| || |||| |||| | | || |||| || Sbjct 7032842 AGTTTGCTCCCTTTCATCATTCCCT---CCACCAATCCCAGTTCCTCTCTGTCTTCCAAC 7032786 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAAG 9760 |||||||||||||| ||||| || | ||||| | || || | || | ||| Sbjct 7032785 AGCATCAATCTCATCGATGAACACCAAACATGG--GGAGTTAGCCTTTGCCTTGTTAAAC 7032728 Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 || |||| || || || | || || || || ||||||||||| | || | || | | Sbjct 7032727 AGGTCCC-TA-ACTCTGGAAGCTCCAACGCCTACAAACATCTCGATGAACTCTGAACCAG 7032670 Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 || | ||| || || | ||| || |||||||| ||| || | ||||||| Sbjct 7032669 AAAGGGAAAAGAAAGGAACCCCTGCTTCCCCTGCAATGGCCTTGGCCAGCAATGTCTTAC 7032610 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCC--AAA 9936 | || ||||| || || || | ||| ||||| |||| ||| || | || Sbjct 7032609 CAGTCCCTGGAGGTCCAATTAGAAGCACTCCTTTGGGAATTGTGGCACCAATTGCTGCAA 7032550 Query 9937 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTC 9996 | | ||| |||| ||||| || ||||| | |||| || || | ||||| | || Sbjct 7032549 ATTTTTCTGGGGTT-TTTAAG-AACTCCACTACCTCTTGAAAATCTTTCTTGGCTTCATC 7032492 Query 9997 AATCCCCTCAACATCGGTAAA 10017 ||| || | |||||| |||| Sbjct 7032491 AATACCAGCTACATCGTTAAA 7032471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253261354160