Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq11 120 3e-22 >seq11 Length=62681010 Score = 120 bits (132), Expect = 3e-22 Identities = 244/356 (69%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 59766 AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC--AGTCGTTCAACGAGT 59823 || || |||||||| ||||||| || | || || | || || | ||| | | ||| Sbjct 8941953 AAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATG-GTTTCCAAATCGCT-ATCGAAA 8942010 Query 59824 CTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGA 59883 |||||||||||||| |||| ||| | |||| | | | || ||| | || || | Sbjct 8942011 ATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAA 8942070 Query 59884 AGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGG 59943 || |||| ||||| ||||| |||||| || || ||||||| || |||| Sbjct 8942071 AGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGG 8942130 Query 59944 CCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 | ||| | ||||| || | |||| | | || || |||| | || |||||||| ||| Sbjct 8942131 CTATGAAATGGATCGACGGC-GGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGC 8942189 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || ||||| ||||| ||||| || |||||||| || || ||| | |||||| | || Sbjct 8942190 GTAGAAGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGG 8942249 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||| || | | |||||| |||||| | || || || || || || ||||| Sbjct 8942250 TTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCA 8942305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548517710316960