Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 6e-13 seq13 87.8 2e-12 seq4 84.2 2e-11 >seq7 Length=60982465 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 51748319 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 51748260 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 51748259 TGAGCTACGAAAGC 51748246 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||| ||||||| ||||| Sbjct 51768509 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGAGTGCTCTAACCAAC 51768450 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 51768449 TGAGCTACGAAAGC 51768436 >seq13 Length=58321163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| || || Sbjct 33253018 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACTAAC 33252959 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 33252958 TGAGCTACGAAAGCA 33252944 >seq4 Length=62178258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 62016368 ACTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 62016309 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 62016308 ACTGAGCTATGAAAGC 62016293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208927233200