Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq9 100 2e-16 seq10 87.8 1e-12 seq11 84.2 2e-11 seq2 84.2 2e-11 >seq9 Length=70713020 Score = 100 bits (110), Expect = 2e-16 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| |||||||| || || || |||| || |||||| || Sbjct 66888875 ATGCAAATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGCTCC 66888816 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 66888815 GATACTATCGATAAT--GTCAAGGCCAAAATCCAAGACAAAGAAGGGATTCCTCCAGACC 66888758 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | ||| || | || ||||||||||||||| | || || | || | |||| |||| ||| Sbjct 66888757 AACAAAGGCTTATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTG-CCGACTAC 66888699 Query 27967 AACATCCAAAAAGAG 27981 ||||||||||| ||| Sbjct 66888698 AACATCCAAAAGGAG 66888684 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || || | ||||| ||| || ||| | || ||||| ||| | Sbjct 66887963 ATGCAGATATTCGTTAAGACCTTGACTGGTAAAACCATAACACTGGAGGTCGAGAGCTCG 66887904 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || ||| ||||| ||||| || || |||| || | Sbjct 66887903 GACACCATTGACAAT--GTTAAAGCGAAAATTCAGGACAAGGAGGGGATTCCTCCAGACC 66887846 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| |||||||||||||| || | || || | | | ||||| | || || Sbjct 66887845 AGCAGAGGTTGATTTTTGCCGGAAAGCAGCTTGAGGATGGGAGGACGCTTG-CGGACTAT 66887787 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||||||| || |||| |||||||||||||||| Sbjct 66887786 AACATCCAAAAGGAATCCACTCTGCATTTGGTTTTGCG 66887749 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| |||||||| || || || |||| || || ||| || Sbjct 66882265 ATGCAGATCTTTGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTGGAGAGCTCC 66882206 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| || || ||||| ||||| |||| || | Sbjct 66882205 GATACTATCGATAAT--GTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCAGATC 66882148 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA-CGAACGCAGCTTGTCCGATTAC 27966 |||| |||| |||||||||||||||||| | || || | | | |||| | |||||| Sbjct 66882147 AGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTG-CAGATTAC 66882089 Query 27967 AACATCCAAAAAGAG 27981 |||||||| |||||| Sbjct 66882088 AACATCCAGAAAGAG 66882074 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| |||||||| || || || |||| || ||||| | Sbjct 66882721 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGTTCT 66882662 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| ||||||||||| | || || | Sbjct 66882661 GATACTATCGATAAT--GTCAAGGCTAAAATCCAAGACAAAGAAGGGATCCCTCCTGACC 66882604 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 ||||| || | || ||||||||||||||| | || || | || | |||| |||| ||| Sbjct 66882603 AGCAAAGGCTTATCTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTG-CCGACTAC 66882545 Query 27967 AACATCCAAAAAGAG 27981 || |||||||| ||| Sbjct 66882544 AATATCCAAAAGGAG 66882530 >seq10 Length=62175169 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || || || || || | || ||||||||| | Sbjct 51860905 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAAAGCTCT 51860964 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| ||||| | || || | Sbjct 51860965 GACACCATTGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCAGACC 51861022 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||| |||||| | || |||| |||| |||| ||||||||| Sbjct 51861023 AGCAAAGGCTCATCTTTGCCGGGAAACAACTCGAGGACGGTCGCACCTTGGCCGATTACA 51861082 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | |||||||| ||| | | ||||| || Sbjct 51861083 ACATCCAGAAGGAGTCGACCCTCCATTTGGTATTGAGGCTTCGTGGTGG 51861131 >seq11 Length=62681010 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| | || || || || || | || ||||| ||| || Sbjct 1163907 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAGACAATCACTCTCGAGGTCGAGAGCTCC 1163848 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| || || || || ||||| ||||| | || || | Sbjct 1163847 GACACGATCGACAAC--GTTAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACC 1163790 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || || |||||||||||| | || |||| || | |||| |||| |||| Sbjct 1163789 AGCAACGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGTACCTTGGCCGACTACA 1163730 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | || | || | |||||||| ||||| Sbjct 1163729 ACATCCAGAAGGAGTCAACTCTCCACCTTGTCCTTCGTTTGCGCGGCGG 1163681 >seq2 Length=62769430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| |||||||| || || || |||| || |||||| || Sbjct 10571662 ATGCAAATATTTGTCAAAACCCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCC 10571721 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| || || |||||||||||| | || || | Sbjct 10571722 GACACAATTGATAAT--GTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACC 10571779 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| || |||||| |||| || | |||| | | | || |||| Sbjct 10571780 AACAGAGGCTTATCTTTGCTGGTAAACAACTGGAGGATGGCCGCACCCTTGCTGACTACA 10571839 Query 27968 ACATCCAAAAAGAG 27981 ||||||| |||||| Sbjct 10571840 ACATCCAGAAAGAG 10571853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355857915466518