Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq6 96.9 3e-15 seq8 93.3 4e-14 seq9 86.0 5e-12 >seq2 Length=62769430 Score = 107 bits (118), Expect = 2e-18 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || || ||| ||||| || ||||| || ||||| |||| | Sbjct 10572104 CGCAACACCAAATGGAGGGTAGACTCCTTTTGAATGTTATAGTCTGCAAGGGTTCTGCCA 10572045 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || ||||||||||| || ||||| || | | ||||||||| |||||| | || ||| || Sbjct 10572044 TCTTCAAGCTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCTGGTGGG-ATGCCCTCCTT 10571986 Query 39189 GTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| | | | | | || | | | ||||| |||||| || | |||| Sbjct 10571985 GTCC-TGAATCTTGGCCTTAACGTTATCAATTGTATCAGAACTCTCCACCTCTAAAGTGA 10571927 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || |||||||| |||||||| ||||| Sbjct 10571926 TGGTTTTTCCAGTGAGCGTTTTTACAAAGATCTGCAT 10571890 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| || || ||||||||||||||||| |||| | | || ||| Sbjct 27609668 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 27609609 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || ||||| || ||||| || | | || ||||| |||||| | | ||||||||| Sbjct 27609608 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG-ATTCCTTCTTTGTCCTG 27609550 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251 || || ||| | | | | ||||| ||| ||| || |||| ||||| | Sbjct 27609549 AATCTTGGCTTTCACATTATCAATGGTATC---CGAACTCTCGACCTCCAAGGTGATTGT 27609493 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| |||||||||||||| Sbjct 27609492 CTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 27609460 >seq6 Length=51074515 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 |||||| || | || || ||| ||||| || || |||||||||||||| || || | Sbjct 42745189 GCGTAAGACGAGGTGGAGGGTGGATTCTTTCTGGATGTTATAATCGGCAAGGGTCCGACC 42745130 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 ||| || ||||||||||| || || || |||||||||||||| |||||| | || || | Sbjct 42745129 GTCTTCGAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCT-TCCT 42745071 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 |||| ||| || |||| ||| | | | || ||| || || || | || Sbjct 42745070 TGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTT 42745012 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | || || || || ||||| |||||||| |||||||| Sbjct 42745011 ATGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCATCTT 42744971 >seq8 Length=57128820 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | ||| || ||| || || || || || || ||||| Sbjct 38526372 CCTCCCCTAAGACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 38526313 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || |||| || ||||| ||||| ||||| || || ||||| ||||||| || Sbjct 38526312 AAGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGG 38526253 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| ||||| ||| || ||||| | | | || ||| ||||| || Sbjct 38526252 ATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 38526193 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||||||||||||| Sbjct 38526192 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATTTGCATCTTT 38526142 >seq9 Length=70713020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||| || |||| || | || | || || ||| ||| ||||| || Sbjct 66888636 AAATATCTGCATGCCACCCCTTAGACGAAGGACTAGGTGGAGGGTGGACTCCTTTTGGAT 66888695 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || || |||||||| ||||| | || ||||| ||||| || ||||| ||||| | || Sbjct 66888696 GTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGTTTTCCGGCAAAGATAAGCCTTTG 66888755 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 ||||| | || | | |||||||| |||||| |||| | | | ||||| Sbjct 66888756 TTGGTCTGGAGGAATCCCTTCTTTGTCTTGGATTTTGGCCTTGACATTATCGATAGTATC 66888815 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || | ||||| | || || || || ||||| |||||||||||||| Sbjct 66888816 GGAGCTTTCTACCTCAAGGGTGATGGTCTTACCAGTAAGGGTTTTCACAAAGATTTGCAT 66888875 Query 39285 CT 39286 || Sbjct 66888876 CT 66888877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429540186920042