Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq11 136 3e-27 >seq11 Length=62681010 Score = 136 bits (150), Expect = 3e-27 Identities = 379/578 (66%), Gaps = 5/578 (1%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || || || ||||| || || | |||||| |||| || | ||||| || || ||| Sbjct 8942323 AAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 8942264 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 |||||||||||||| || |||||||| | ||||||||| || || || || || Sbjct 8942263 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 8942204 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || ||||||||| ||||| || | ||| || |||| | | || | | Sbjct 8942203 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAG---TTTCTCCGCCG 8942147 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | |||||||| | ||||| | |||||||| || ||||| | || | || ||| Sbjct 8942146 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 8942087 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 || | | |||||| | |||| || ||||| || | || || || ||| Sbjct 8942086 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 8942027 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGT 4903 || || || || |||||||| ||||| || || || || | ||||||| | || || | Sbjct 8942026 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 8941968 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | || || || || || | | | | ||| || ||||| || || ||| Sbjct 8941967 GATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 8941908 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 || ||||| || | ||| ||| || |||| || || || | | || ||| ||| Sbjct 8941907 GGCGAAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTTCCCA 8941848 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 ||| | | ||| || | ||| ||||| || | ||||||||||||||||| ||||| Sbjct 8941847 GTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 8941788 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 |||||||| ||| | || || || || ||||||| Sbjct 8941787 CTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAA 8941750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044218374322