Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20]
1,034 sequences; 761,565,430 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq11 165 1e-35
seq1 127 3e-24
seq2 125 1e-23
seq3 120 4e-22
>seq11
Length=62681010
Score = 165 bits (182), Expect = 1e-35
Identities = 384/579 (66%), Gaps = 0/579 (0%)
Strand=Plus/Minus
Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686
|| || || ||||| || || || |||||||||| ||||| ||||| || || ||
Sbjct 8942323 AAGCAAGCGAAATCGCAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 8942264
Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746
| || ||||||| || | |||||| | ||||||||| || |||| ||| || ||
Sbjct 8942263 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 8942204
Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806
|| || |||||||| || || |||| | | || || || | | | |
Sbjct 8942203 AAGATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCG 8942144
Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866
||||| | |||||| || || ||||| ||||| |||| || || || ||
Sbjct 8942143 ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGG 8942084
Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926
|| ||| ||| |||||||| |||||| | || || || | | ||||| |||||
Sbjct 8942083 AAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATC 8942024
Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986
|| || || || ||||| ||||| || || || || |||||| | || || | |||
Sbjct 8942023 TCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATC 8941964
Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046
|| |||||| | || || ||| | |||||| ||||| ||||| || ||
Sbjct 8941963 TGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCG 8941904
Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106
||||| || | || || |||| || | | ||||||| || || | | ||||| |
Sbjct 8941903 AAAAAGGCGAGAACGTGACTAATGAAGTGGTGCTCATCGGCGGTGAGAGTTTCCCAGTGA 8941844
Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166
| ||| || | ||| ||||| || || ||||| || ||||| || ||||| ||
Sbjct 8941843 CGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTG 8941784
Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATA 47205
||||| | ||||| || | |||||||||||||| |||
Sbjct 8941783 TACATTTCCCATACTTCTGGGTATTGGATCGGAAACATA 8941745
>seq1
Length=55868233
Score = 127 bits (140), Expect = 3e-24
Identities = 551/869 (63%), Gaps = 8/869 (1%)
Strand=Plus/Minus
Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398
|| || || || || || | |||||||| ||||| ||||| |||| |||||| || |
Sbjct 54863034 TTCTGATACTCCCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 54862975
Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458
||||| ||||||| || |||| |||| || ||||| | | ||||| || ||
Sbjct 54862974 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTATA 54862915
Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518
| ||| |||||||| || || || |||||| |||| ||||| || | |
Sbjct 54862914 C--CGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCGTTCATCCCAACTAAC 54862857
Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578
| || ||||| || | |||||| || | | || |||||| | |||
Sbjct 54862856 GCGCAGGGAAGAGCGTCGCATACAAACTCCCTCTCTACATCCACCGCATCCCTCACTATT 54862797
Query 46579 GATGTTACTGTTTCCTCACTTGG---TGGATGCATCAAATGTTTAAACATTAAACATGCA 46635
| || || |||||| | || || | | | | ||| || || |||
Sbjct 54862796 CCCTTCACGCGCTCTTCACTTAGCTTTGACTGGAGGAGAGAGT---ACAGCAAGCAAGCA 54862740
Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695
|| || ||||| || |||||||||| | || || | ||| || || || ||||||
Sbjct 54862739 AAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTTGTTTGAGAAAGTTTATCCAGGC 54862680
Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755
|||| || |||||||| | ||||||||| || |||| || || || |||||||||
Sbjct 54862679 ATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAAAATATGCCT 54862620
Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTT 46815
||||| ||||| |||| | | || | || | | | ||||| |
Sbjct 54862619 TCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTCGATCCATTTC 54862560
Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875
||||||||| || ||||| || || |||| ||||| |||| | ||||| |
Sbjct 54862559 AAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGG 54862500
Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935
|| ||||| |||||||| ||| || || | | ||||||||||| || || ||
Sbjct 54862499 TTCTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATACATCTCAGAGTGG 54862440
Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
|| || || || || || || ||||| ||||| | || || | || || ||||||
Sbjct 54862439 ATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCCGCGATTTGGACCTCT 54862380
Query 46996 GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055
| || || | | | ||| || || || ||||| || || || || ||
Sbjct 54862379 TTCATGAAGCGAACGGCGAGATTTTCTAGGACGATGCCATCGGATGCGGCGAAGAAGGCA 54862320
Query 47056 AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCT 47115
| ||||| | || || | ||| |||| | || || | ||||| | |||
Sbjct 54862319 AGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTTGCCAGTGTGGAAGATCG 54862260
Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175
|| | ||| ||||| || || ||||| || || || || ||||| || ||||| | |
Sbjct 54862259 GAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTCTTGTACATTTCC 54862200
Query 47176 CATATATCACGATATTGGATCGGAAAAAT 47204
||||| | | |||||||| || || ||
Sbjct 54862199 CATATCTGTGGGTATTGGATTGGGAACAT 54862171
>seq2
Length=62769430
Score = 125 bits (138), Expect = 1e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
||||| ||||| | ||||| ||||| | ||| | || | || |||||| | ||| ||
Sbjct 29135070 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 29135011
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
||||||||||||||||||||| ||||||||| || || |||||||| || |||
Sbjct 29135010 TTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGAA 29134951
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || |||||||| || ||| ||| | |||||| ||||| || ||||| ||
Sbjct 29134950 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATATT 29134891
Query 76934 CCCTCTATACTATCATCCATCATG 76957
|| || ||||||||||| |||||
Sbjct 29134890 CCTTCAATACTATCATCTTTCATG 29134867
Score = 87.8 bits (96), Expect = 3e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
||| || ||||| || | || ||||| ||||||||||||||| ||| ||| | | |
Sbjct 29134728 AGTCCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 29134669
Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112
|| |||| ||| | | || || || | ||||||||| ||||| || | ||| ||
Sbjct 29134668 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 29134609
Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172
||| |||||||| | ||||| | ||| | | |||||| | || || | ||||
Sbjct 29134608 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 29134549
Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205
||||| || ||||| || | ||| ||||||
Sbjct 29134548 GGTTTTGAAGCCAAAGTAATCGTAGTCAAAGTC 29134516
Score = 87.8 bits (96), Expect = 3e-12
Identities = 92/120 (77%), Gaps = 6/120 (5%)
Strand=Plus/Minus
Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147
|| |||| ||||| || |||||||||||||||||||| || ||||| | | ||| ||
Sbjct 29136420 ATGAATGTGTCTGCAAGACCCTGAACTCCAATACCAATTGGCCTATGACGCAAATTTGAT 29136361
Query 76148 ATTT---CAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTG 76204
||| ||| ||| || ||||| ||||||| ||| |||||||| || |||||||||
Sbjct 29136360 CTTTTGGCAGTTTC---AACGGGGTAGTAATTAACATCAATAATTTTGTTAAGATTTCTG 29136304
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795
||| ||||| ||| | |||||||| ||||||||| || | ||||||| || || |
Sbjct 29137045 CAAAACTCTACGACTATAAATATTGGAGGTATATGGCTCAAAGCATTCATTATTCCCAAG 29136986
Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCAT 75854
||| ||| |||||||||||| ||||||||||| | ||||| |||||| | ||||
Sbjct 29136985 AATCTGACTAGTTGAAGCAGTTGGCATAGGTGCTAACAATAGTGAATTTCTCACTCCAT 29136927
>seq3
Length=45765648
Score = 120 bits (132), Expect = 4e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
||||| ||||| | ||| | ||||||| ||| | || | || |||||| | ||||||
Sbjct 6819936 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 6819995
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
||||||||||||||||||||| ||| ||||| | || |||||||| || ||
Sbjct 6819996 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 6820055
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || |||||||| || ||| ||| | |||||| ||||| |||||||| ||
Sbjct 6820056 ACACCAATTCCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTGTCATATATT 6820115
Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974
||||| ||||| ||||| |||| || | ||| |||||
Sbjct 6820116 CCCTCAATACTGTCATCTTTCATACACAGTAAAAAGCAGCT 6820156
Score = 105 bits (116), Expect = 1e-17
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551
|||||||||||| || |||| | | |||||||| || |||||| ||| ||| ||
Sbjct 6819451 CTCTCTTTCATAATGAATATACAGCTCCTCAAATTCTTCACCCCAACAATCTGCCAGTCC 6819510
Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611
||| ||||||| ||||| | |||||||||| |||| || || | || ||||||
Sbjct 6819511 TGGAGATTCATTAGGACAGAATAATGACCACTGCCCATTACTCTGGACTCTTTGCATAAA 6819570
Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647
|||||||| | |||||||||| ||||||||| ||
Sbjct 6819571 AAGATCAGGCACCCATAGAGCATAAAATAGATCACG 6819606
Score = 95.1 bits (104), Expect = 2e-14
Identities = 93/119 (78%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147
|| |||| |||||| || |||||||||||||||||||| |||||||| | | ||| ||
Sbjct 6818546 ATGAATGTATCTGCAAGCCCCTGAACTCCAATACCAATGGGTCTATGACGCAAATTTGAT 6818605
Query 76148 ATTT---CAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203
||| ||| ||| || |||||| ||||||| ||| || ||||| || ||||||||
Sbjct 6818606 CTTTTTGCAGTTTC---AACAGGGTAGTAATTAACATCAATTATTTTGTTAAGATTTCT 6818661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712925185322880
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