Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq10 107 2e-18 seq11 95.1 1e-14 seq13 89.7 4e-13 seq2 89.7 4e-13 seq9 84.2 2e-11 >seq6 Length=51074515 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||||||||| || |||||||||||||| || ||| |||| ||| | | Sbjct 42745430 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 42745489 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | || || ||| ||| || || ||||| | || ||||| Sbjct 42745490 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 42745549 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||||| || | ||| |||||||||||||||||| | ||| |||| |||||||| Sbjct 42745550 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 42745609 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || ||||| ||||| || || | || | ||||| || |||||| Sbjct 42745610 ATTCAGAAAGAGTCTACCCTTCACCTTGTTCTTCGTCTCCGTGGTGGC 42745657 >seq10 Length=62175169 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| ||||| |||||||| || |||||||| || |||| ||| | Sbjct 51861133 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 51861192 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | | || || || ||| ||||||||||| |||| ||||| Sbjct 51861193 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAG 51861252 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| | |||| || || ||||| ||||||||| | ||| |||| ||||| ||| Sbjct 51861253 CAAAGGTTGATTTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTTTGGCTGATTACAAT 51861312 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || || | || |||||||| || ||||| Sbjct 51861313 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGTCTTCGTGGTGG 51861359 >seq11 Length=62681010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || ||||| || |||||||| || || ||||| | ||| ||| | Sbjct 1163451 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCG 1163392 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| || ||| ||||||||||| |||| ||||| Sbjct 1163391 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 1163332 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| | |||| ||| || ||||| |||||||| | ||| |||| ||||| ||| Sbjct 1163331 CAAAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGAAGGACTTTGGCTGATTACAAT 1163272 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| || || || || || | || | ||||| || ||||| Sbjct 1163271 ATTCAAAAGGAGTCCACTCTTCACCTTGTTCTTCGTCTTCGTGGTGG 1163225 >seq13 Length=58321163 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGA--AACGGAACCC 111156 ||||||||||||||| || || ||||| || || |||||||| |||| | || | Sbjct 44437405 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACCATTACATTGGAGGTAGAGAGTTC 44437346 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 | ||| | ||| | | || || ||||||| ||||| || || | ||| || Sbjct 44437345 A--GATACCATTGACAATGTTAAGGCAAAAATTCAGGACAAGGAGGGAATCCCCCCAGAC 44437288 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 ||||| ||||| |||| ||| || || ||| |||| ||| || |||| || ||| Sbjct 44437287 CAACAGAGGCTGATTTTTGCTGGTAAGCAACTGGAGGATGGCCGTACCCTGGCTGACTAT 44437228 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| || || || || || || || || ||| | ||||| || ||||| Sbjct 44437227 AATATCCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTCTTCGTGGTGG 44437178 >seq2 Length=62769430 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||||||||| | || || || || || ||| |||| || Sbjct 27609460 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATCACCTTGGAGGTCGAGAGTTCG 27609519 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| || ||| ||||||||||| | || || ||| Sbjct 27609520 GATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAA 27609579 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| ||| || |||||| | |||||| | |||| | |||||||||||| Sbjct 27609580 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATAAT 27609639 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || ||||| || ||||| || | || || || ||||| Sbjct 27609640 ATCCAGAAGGAGTCTACTCTCCATTTGGTTCTCCGCCTTCGGGGTGG 27609686 >seq9 Length=70713020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| | || || || ||||| ||| | || ||| | | Sbjct 66888875 ATGCAAATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGCTCC 66888816 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | || || ||||| ||||||||||| |||| || ||| Sbjct 66888815 GATACTATCGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGGATTCCTCCAGACCAA 66888756 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||||||||| | ||| || |||||| | || ||| |||| | ||||| || || Sbjct 66888755 CAAAGGCTTATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTGCCGACTACAAC 66888696 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||| || || || || || |||| | ||||| | ||||||| Sbjct 66888695 ATCCAAAAGGAGTCCACCCTCCACCTAGTCCTTCGTCTAAGGGGTGGCA 66888647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421805884387984