Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20raimondii_20[refseq_20GCF_5F000327365.1_202012-12-20] 1,034 sequences; 761,565,430 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq2 100 7e-17 >seq2 Length=62769430 Score = 100 bits (110), Expect = 7e-17 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 31721 TCGTTACATGGCATTATTGGGAACTGAGGGTTTAGCGGTTGTAGGAATACTTGTCCGCTG 31780 || || ||||| || |||||| |||| |||||||| ||||||| || || || ||||| Sbjct 60927520 TCATTGCATGGGATCATTGGGTACTGTGGGTTTAGTGGTTGTAAAAACACCTGACCGCTA 60927579 Query 31781 TCTTTGATGAGCTTCTTAAAAGTGAACTCATCACCACATAACCTTGCAATGCAAAAATCG 31840 || |||| || ||||| || || ||||||||||| | | || || ||||| ||||| Sbjct 60927580 TCCCTGATCAGTTTCTTGAAGGTAAACTCATCACCCCCAAGTCTGGCTATGCAGAAATCA 60927639 Query 31841 CCTGGGTCTACAG 31853 ||||| || |||| Sbjct 60927640 CCTGGCTCAACAG 60927652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129294412406740