Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq14 152 5e-32 seq15 123 3e-23 seq12 84.2 2e-11 >seq14 Length=174509413 Score = 152 bits (168), Expect = 5e-32 Identities = 300/436 (69%), Gaps = 7/436 (2%) Strand=Plus/Minus Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 |||| || ||||||||||| ||||| || || |||| ||| | |||||| || ||| Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 |||| || ||||| || || || || | ||| |||||||| ||| || || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAG 142132968 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 |||||||| || |||||| | ||||| || || | || || || ||| || | | Sbjct 142132967 AAGAATATTCCTTCGACGCAGGCAAAAGCAATGATCCGCTCTGCAAACGATTCGGATCCG 142132908 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | ||| |||||||| || |||| | |||||| | || ||||| || ||||| || Sbjct 142132907 T--CGA-TCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAATC 142132851 Query 17198 GCCTTAAATA-ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 || ||||| | |||||| || | || | || || | |||| | || || Sbjct 142132850 GCGCGAAATAGACGATTCTTTTCAGTGGAA-TCTTTGATGTAGGATTCGAGTAACAGACT 142132792 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGCTT 17315 |||||| |||||||| ||||| || ||||| || ||||| ||||| || ||| || || | Sbjct 142132791 GTACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCA-CGCGCCT 142132733 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | || || || |||||| |||||| | || || |||||| ||||||||||| Sbjct 142132732 CGGCGATCTGGACTTCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCGTCTG 142132673 Query 17376 TCGCGGCGAAAAACGC 17391 |||||||| || || Sbjct 142132672 AAGCGGCGAAGAAGGC 142132657 >seq15 Length=171247636 Score = 123 bits (136), Expect = 3e-23 Identities = 390/593 (66%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 16952 TTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGT 17009 ||| ||| || || |||||||||||||| || |||||||||| || |||| | |||| Sbjct 39549694 TTATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTC-GC-GATATCAACTCGT 39549751 Query 17010 TAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACG 17069 | || || || || || |||||| || || ||||| ||||| || || || || Sbjct 39549752 TCGAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCACAAAAGC 39549811 Query 17070 ACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG 17129 |||||||||||||| || || || | ||||| || |||| || || || ||| Sbjct 39549812 TACCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAACGATT 39549871 Query 17130 CGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCG 17189 | || ||| |||| ||| | |||| | || |||| || || || || | Sbjct 39549872 CTGAACCGT--CGA-TCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTG 39549928 Query 17190 TTTCTATGGCCTTAAATAATTTCTCTTTTTC--CTGTAGGTCGATTATATACGTATCGAT 17247 | || || || || || | |||||| | | | || | || |||| || | Sbjct 39549929 TCTCAATAGCACGGAACAAACGGTTTTTTTCAACAGAA--TCTTTGATGTACGATTCCAA 39549986 Query 17248 GAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCA 17307 || | ||||||||||| ||||| || ||||| || || || ||||| ||||||||| Sbjct 39549987 CAGCAAACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGC 39550046 Query 17308 TCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGAT 17367 || || || | || || ||||| ||| || | || || ||||| || || Sbjct 39550047 ACGCGCCTCGGAGATCTGTACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAAT 39550106 Query 17368 GCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT--CCGGT 17425 |||||| || ||||| || || | || || ||||||| | ||||| |||| Sbjct 39550107 GCCGTCTGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGT 39550166 Query 17426 GTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAA 17485 |||| | | ||||| | | |||| |||| || |||||||| | |||||| || Sbjct 39550167 -TAAGGA-GTCCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAAT 39550224 Query 17486 CTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || | |||||||| ||||| | ||| || | |||||| || ||||| Sbjct 39550225 GAGGCTTCGGCCTTTTTGTACATTTCCCAGATTTGTGGGTATTGGATTGGGAA 39550277 >seq12 Length=166489593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 |||||| || || || ||||||| |||||||||||| |||||||| || || || || Sbjct 16892781 CAGACAAGCAAAGTCACAATGTAGACCCTCGTCTCTGGATATAAGTTCATTTGAGAAAGT 16892840 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058 |||||| ||||| ||||| ||||||| |||||| || Sbjct 16892841 CAACCCTGGCATTAATCCTCTCTTCTTTAGCCAAAAAAT 16892879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517535714879040