Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq15 141 1e-28 seq12 95.1 1e-14 >seq15 Length=171247636 Score = 141 bits (156), Expect = 1e-28 Identities = 388/582 (67%), Gaps = 18/582 (3%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTA 16259 || ||||| |||||||| | || ||||||| || |||| | ||||| || || |||| Sbjct 39549706 CAAGCGAAATCGCAATGCAAACCCTCGTCTC-GC-GATATCAACTCGTTCGAGAACGTTA 39549763 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 | || ||||| || || ||||| |||||||| || ||| ||| || ||||||| Sbjct 39549764 AACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCACAAAAGCTACCAGAAAAGA 39549823 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 |||| || |||||| | ||||| || |||| || || || ||| ||| | Sbjct 39549824 ATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAACGAT---TCTGAACCGT 39549880 Query 16380 GAATCCATTTCTGTACCCA-TTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 ||||| ||| |||| |||| |||||| | | | ||| || || || || || Sbjct 39549881 CGATCCACTTCATCGCCCAATTCGCCTTTTTCTGT-ACACATGGTATTGTCTCAATAGCA 39549939 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 ||||| | |||||| | ||| | || |||| || | ||| ||||||||| Sbjct 39549940 CGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTAC 39549999 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 ||||| ||||| || ||||| || || || ||||| || || ||| || ||||| | Sbjct 39550000 ATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGCGCCTCGGAG 39550059 Query 16559 ATTTGTACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 || |||||||| || | || || | || ||||| || || || ||||| | Sbjct 39550060 ATCTGTACTTCTTTCATG---AAGCGGCCAGCGAGGTTTTCCAATACAATGCCGTCTGAT 39550116 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATG-TAAGAATATG 16674 ||||| || || || | || ||| ||||||| | ||||| | |||| | | Sbjct 39550117 GCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTTAAGGA-GTC 39550175 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | || | |||| |||| || |||||||||| ||||| || || | || Sbjct 39550176 CCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAGGCTTCGGC 39550235 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA 16775 |||||| ||||||| ||| || | |||||| | |||||| Sbjct 39550236 CTTTTTGTACATTTCCCAGATTTGTGGGTATTGGATTGGGAA 39550277 >seq12 Length=166489593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || ||||| |||||||| || ||||||||| |||||||| || || ||||| Sbjct 16892782 AGACAAGCAAAGTCACAATGTAGACCCTCGTCTCTGGATATAAGTTCATTTGAGAAAGTC 16892841 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA 16305 |||||||||||| ||||| ||||||| ||| || || | |||||| Sbjct 16892842 AACCCTGGCATTAATCCTCTCTTCTTTAGCCAAAAAATTG-AGCAAA 16892887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511404631984960