Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 212 7e-50 seq14 201 1e-46 seq9 98.7 1e-15 >seq15 Length=171247636 Score = 212 bits (234), Expect = 7e-50 Identities = 429/630 (68%), Gaps = 14/630 (2%) Strand=Plus/Plus Query 24123 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 24182 ||| ||| ||| || ||||||||||| || | ||||||||||| || || ||||| Sbjct 39549694 TTATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTC 39549753 Query 24183 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 24242 || ||||| | || ||||| | |||||||| || | ||| || || | | |||| | | Sbjct 39549754 GAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAG-CACAAAAGCT 39549812 Query 24243 -CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC 24301 ||||||||||| |||||||| || ||||||||||| | ||| ||| || | || Sbjct 39549813 ACCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAA--CGAT 39549870 Query 24302 GCTGTCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 24359 ||| || |||||||| ||||||| ||||| || | |||||| || |||||| Sbjct 39549871 TCTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTC 39549930 Query 24360 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 24419 || |||||| || | | |||||||||| | |||||| | || | || | || Sbjct 39549931 TCAATAGCACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGC 39549990 Query 24420 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 24479 | ||| |||||||| || || || || ||||| || |||||||| ||||| || | Sbjct 39549991 AAACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGC 39550050 Query 24480 GCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 24539 ||||||| |||||||||||| | || || | || | ||||| || || ||| Sbjct 39550051 GCCTCGGAGATCTGTACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCG 39550110 Query 24540 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 24599 || || || || || || | ||| || | || || | ||||| ||| || Sbjct 39550111 TCTGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGT----TGTCGGT 39550166 Query 24600 T---TATTCCAATCATTGAT-ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655 | | ||| | ||| | |||| |||| || |||||||| | ||||| ||||| Sbjct 39550167 TAAGGAGTCCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGA 39550226 Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || || |||||||| ||||| | |||||| | | ||||| ||||| || || || Sbjct 39550227 GGCTTCGGCCTTTTTGTACATTTCCCAGATTTGTGGGTATTGGATTGGGAACATGCAGAA 39550286 Query 24716 TCTATTTGGATTTTTTGCAAGGATTGGTTC 24745 ||| | || ||| | |||||||| || Sbjct 39550287 TCTGTCGGGGTTTGGGGTTAGGATTGGGTC 39550316 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| |||| ||| |||||||| || || ||||| | | || | | || Sbjct 145648153 GTCCCTGCATTGAATAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAATGA 145648212 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || |||| ||| | || || || || || ||||| || || | || | ||| ||| Sbjct 145648213 TAAGTCTTGATTACCGAATCAATGTCATCTTTGTGAATCCCAACCGAAACCCTCATCAAC 145648272 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 || || |||||||||||||| | ||| || |||| | || || | || | Sbjct 145648273 ATATGTTGAGGTCTTTCAACAACCTTCCCTCCAATCTTCAATAGATATGACCTCTCAAGG 145648332 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||||||||||||||| | || |||||| || ||||| ||||| Sbjct 145648333 GTTTTAAAACCAAAATAATCATAATCAAAGTCCCGATCGTATATAAT 145648379 >seq14 Length=174509413 Score = 201 bits (222), Expect = 1e-46 Identities = 399/586 (68%), Gaps = 10/586 (2%) Strand=Plus/Minus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 ||||| || |||||||||||||||| ||| || |||| ||||||||||| || || Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 24247 || ||||| ||||||| || |||||||| ||||| ||||| | | || || ||| || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCG-CACAGAAGCTTCCTGA 142132969 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGCGC 24303 ||||| |||||||| || ||||| ||||| | | ||| || ||| ||| | Sbjct 142132968 GAAGAATATTCCTTCGACGCAGGCAAAAGCAATGATCCGCTCTGCA-AACGATTCGGATC 142132910 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 ||| ||||| || | ||||||| ||| ||||| | | || || || || || | Sbjct 142132909 CGTC---GATCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAA 142132853 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | || ||| ||| || |||||| | |||||| | || | || | || |||| Sbjct 142132852 TCGCGCGAAATAGACGATTCTTTTCAGTGGAATCTTTGATGTAGGATTCGAGTAACAGAC 142132793 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 | ||||| || || || |||||||||||||| |||||||| |||||||| | |||| Sbjct 142132792 TGTACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCACGCGCCT 142132733 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 ||| ||||| ||||| | ||||| | || | ||||| || || ||||| Sbjct 142132732 CGGCGATCTGGACTTCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCGTCTG 142132673 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 24603 || || || || || | || || | || || | |||| | ||||| | | Sbjct 142132672 AAGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAGGGTTT 142132613 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 ||| | | | |||| || | || |||||||| ||||||| ||||| ||||| | Sbjct 142132612 CCCATTGACGGTGGTCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGCCTCGG 142132553 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 | ||||| ||||| | |||||| | | ||||| ||||| || || Sbjct 142132552 CTTTTTTGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACAT 142132507 >seq9 Length=209865144 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | ||| |||||||| || || ||||| ||| || | | || Sbjct 123174741 GTCCCTGCATTGAAGAGGGTGGGAGAAGCATGTGTGAACCACCTTTGTGACATCAAATGA 123174800 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || |||| ||| | || || || || || ||||| || ||||| || | ||| | | Sbjct 123174801 TAAGTCTTGATGACAGAATCAATGTCATCTTTGTGAATCCCAACTGCAACCCTCATCAGC 123174860 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 || || ||||||||||| || | ||| || || |||| || ||| ||| | || | Sbjct 123174861 ATATGTTGAGGTCTTTCCACAACCTTCCCTTTGATCTTCAACAGGTATGATCTCTCAAGT 123174920 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||||| |||||||| | || |||||| || ||||| || || Sbjct 123174921 GTTTTAAAGCCAAAATAATCATAATCAAAGTCCCGATCGTATATGAT 123174967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593710259917440