Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq1 100 2e-16
seq15 95.1 1e-14
seq14 91.5 1e-13
seq16 82.4 7e-11
>seq1
Length=153905722
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || || | || || ||||| || || ||||| || ||| || | |
Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | | || | ||| ||| ||| ||||||||||| | || ||| |||
Sbjct 17864862 GATACGATTGACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCAA 17864921
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| || || |||||||| || ||||| ||||||||| ||| |||| ||||| ||
Sbjct 17864922 CAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCGGACTTTGGCGGATTATAAC 17864981
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
||||||||||||||||| ||||| ||||| | | || |||| |||
Sbjct 17864982 ATTCAGAAGGAATCTACGCTTCATTTGGTGCTGAGGTTGAGAGGTGGG 17865029
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| || ||||| | ||| ||| |||||||| |||||||| || || |||||||| |||
Sbjct 17864211 GACAAGGAAGGAATCCCCCCAGACCAACAAAGGCTTATCTTCGCCGGAAAACAACTTGAA 17864270
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
|| || ||| | || || ||||| || ||||||||||| || |||||| | || |
Sbjct 17864271 GACGGCAGAACCCTCGCTGACTACAACATCCAGAAGGAATCCACACTTCACCTTGTTCTC 17864330
Query 29175 CGATTACGAGGAGG 29188
||||| | |||||
Sbjct 17864331 CGATTGAGGGGAGG 17864344
>seq15
Length=171247636
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| |||| || | || || || ||||| || ||| ||| | |
Sbjct 26151395 ATGCAGATTTTCGTCAAGACTCTCACTGGGAAGACCATCACTTTGGAAGTTGAAAGCTCC 26151336
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || | ||| ||| ||| ||||||||||| | || ||| ||
Sbjct 26151335 GACACCATTGACAATGTGAAGGCAAAGATTCAAGATAAAGAAGGGATCCCGCCAGACCAG 26151276
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| || ||||||||||| || || ||||| ||||| | ||| | ||||| |||||
Sbjct 26151275 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAAGACGGCCGAACCTTAGCCGACTACAAC 26151216
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||||||||| || |||||||| ||||| | || | ||||| ||
Sbjct 26151215 ATTCAGAAGGAGTCCACTCTTCATTTGGTGCTTCGTCTTCGAGGTGG 26151169
>seq14
Length=174509413
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|||||||||||| | || ||||| ||||| ||||| ||||| || || || |||||
Sbjct 117470535 GATAAAGAAGGTATTCCACCGGATCAGCAAAGGCTTATTTTTGCTGGGAAGCAGTTGGAA 117470476
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| | ||| |||| ||||| |||||||||||||| | |||| | || |||| |||
Sbjct 117470475 GATGGGAGGACTTTGGCGGATTATAATATTCAGAAGGAGTTTACTTTGCATCTGGTTTTA 117470416
Query 29175 CGA 29177
|||
Sbjct 117470415 CGA 117470413
>seq16
Length=188620566
Score = 82.4 bits (90), Expect = 7e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|||||||||||| | || |||||||| || ||||| ||||| || || || |||||
Sbjct 146055081 GATAAAGAAGGTATTCCACCGGATCAACAGAGGCTTATTTTTGCTGGGAAGCAGTTGGAA 146055140
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| | ||| || | | ||| |||||||||||||| |||||| | || | || |||
Sbjct 146055141 GATGGGAGGACTTTGCCGGTTTATAATATTCAGAAGGAGTCTACTTTGCATCTAGTTTTA 146055200
Query 29175 CGA 29177
|||
Sbjct 146055201 CGA 146055203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428328023312840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |