Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq15 95.1 1e-14 seq14 91.5 1e-13 seq16 82.4 7e-11 >seq1 Length=153905722 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| || || ||||| || ||| || | | Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| ||| ||| ||||||||||| | || ||| ||| Sbjct 17864862 GATACGATTGACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCAA 17864921 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || |||||||| || ||||| ||||||||| ||| |||| ||||| || Sbjct 17864922 CAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCGGACTTTGGCGGATTATAAC 17864981 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||||||||||||||| ||||| ||||| | | || |||| ||| Sbjct 17864982 ATTCAGAAGGAATCTACGCTTCATTTGGTGCTGAGGTTGAGAGGTGGG 17865029 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| ||| |||||||| |||||||| || || |||||||| ||| Sbjct 17864211 GACAAGGAAGGAATCCCCCCAGACCAACAAAGGCTTATCTTCGCCGGAAAACAACTTGAA 17864270 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || ||| | || || ||||| || ||||||||||| || |||||| | || | Sbjct 17864271 GACGGCAGAACCCTCGCTGACTACAACATCCAGAAGGAATCCACACTTCACCTTGTTCTC 17864330 Query 29175 CGATTACGAGGAGG 29188 ||||| | ||||| Sbjct 17864331 CGATTGAGGGGAGG 17864344 >seq15 Length=171247636 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || | || || || ||||| || ||| ||| | | Sbjct 26151395 ATGCAGATTTTCGTCAAGACTCTCACTGGGAAGACCATCACTTTGGAAGTTGAAAGCTCC 26151336 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||| ||| ||||||||||| | || ||| || Sbjct 26151335 GACACCATTGACAATGTGAAGGCAAAGATTCAAGATAAAGAAGGGATCCCGCCAGACCAG 26151276 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || ||||| ||||| | ||| | ||||| ||||| Sbjct 26151275 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAAGACGGCCGAACCTTAGCCGACTACAAC 26151216 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || |||||||| ||||| | || | ||||| || Sbjct 26151215 ATTCAGAAGGAGTCCACTCTTCATTTGGTGCTTCGTCTTCGAGGTGG 26151169 >seq14 Length=174509413 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || ||||| ||||| ||||| ||||| || || || ||||| Sbjct 117470535 GATAAAGAAGGTATTCCACCGGATCAGCAAAGGCTTATTTTTGCTGGGAAGCAGTTGGAA 117470476 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| |||| ||||| |||||||||||||| | |||| | || |||| ||| Sbjct 117470475 GATGGGAGGACTTTGGCGGATTATAATATTCAGAAGGAGTTTACTTTGCATCTGGTTTTA 117470416 Query 29175 CGA 29177 ||| Sbjct 117470415 CGA 117470413 >seq16 Length=188620566 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || |||||||| || ||||| ||||| || || || ||||| Sbjct 146055081 GATAAAGAAGGTATTCCACCGGATCAACAGAGGCTTATTTTTGCTGGGAAGCAGTTGGAA 146055140 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| || | | ||| |||||||||||||| |||||| | || | || ||| Sbjct 146055141 GATGGGAGGACTTTGCCGGTTTATAATATTCAGAAGGAGTCTACTTTGCATCTAGTTTTA 146055200 Query 29175 CGA 29177 ||| Sbjct 146055201 CGA 146055203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428328023312840