Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq14 91.5 1e-13 seq15 86.0 5e-12 seq4 84.2 2e-11 seq16 82.4 6e-11 >seq1 Length=153905722 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || || ||||| || || ||||| || ||| || | | Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || ||||| ||| ||| ||||||||||| | || ||| ||| Sbjct 17864862 GATACGATTGACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCAA 17864921 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || |||||||| || ||||| |||||||| ||| |||| ||||| || Sbjct 17864922 CAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCGGACTTTGGCGGATTATAAC 17864981 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||||| ||||||||||| ||||| ||||| | | || |||| ||| Sbjct 17864982 ATTCAGAAGGAATCTACGCTTCATTTGGTGCTGAGGTTGAGAGGTGGG 17865029 >seq14 Length=174509413 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||||| ||||| ||||| ||||| || || || |||||| Sbjct 117470535 GATAAAGAAGGTATTCCACCGGATCAGCAAAGGCTTATTTTTGCTGGGAAGCAGTTGGAA 117470476 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| |||| ||||| |||||||| ||||| | |||| | || |||| ||| Sbjct 117470475 GATGGGAGGACTTTGGCGGATTATAATATTCAGAAGGAGTTTACTTTGCATCTGGTTTTA 117470416 Query 25248 CGA 25250 ||| Sbjct 117470415 CGA 117470413 >seq15 Length=171247636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || | || || || ||||| || ||| ||| | | Sbjct 26151395 ATGCAGATTTTCGTCAAGACTCTCACTGGGAAGACCATCACTTTGGAAGTTGAAAGCTCC 26151336 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| ||||||||||| | || ||| || Sbjct 26151335 GACACCATTGACAATGTGAAGGCAAAGATTCAAGATAAAGAAGGGATCCCGCCAGACCAG 26151276 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || || ||| | ||||| | ||| | ||||| ||||| Sbjct 26151275 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAAGACGGCCGAACCTTAGCCGACTACAAC 26151216 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| || |||||||| ||||| | || | ||||| || Sbjct 26151215 ATTCAGAAGGAGTCCACTCTTCATTTGGTGCTTCGTCTTCGAGGTGG 26151169 >seq4 Length=178899001 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| | || ||||| || |||||| || ||| | | Sbjct 81196543 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAGACGATTACCCTTGAGGTCGAAAGCTCC 81196484 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || || || ||| | || ||| ||| Sbjct 81196483 GACACCATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 81196424 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | ||||| || || || || ||||| || || ||| | ||||||||||| Sbjct 81196423 CAGAGATTGATCTTCGCTGGTAAGCAGTTGGAGGACGGCAGGACTCTTGCCGATTACAAC 81196364 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||||||||| || |||||||| |||| Sbjct 81196363 ATTCAAAAGGAGTCAACTCTTCATTTGGT 81196335 >seq16 Length=188620566 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||| || ||||| ||||| || || || |||||| Sbjct 146055081 GATAAAGAAGGTATTCCACCGGATCAACAGAGGCTTATTTTTGCTGGGAAGCAGTTGGAA 146055140 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| || | | ||| |||||||| ||||| |||||| | || | || ||| Sbjct 146055141 GATGGGAGGACTTTGCCGGTTTATAATATTCAGAAGGAGTCTACTTTGCATCTAGTTTTA 146055200 Query 25248 CGA 25250 ||| Sbjct 146055201 CGA 146055203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410789149936592