Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq14 120 5e-22 seq15 113 7e-20 seq16 107 3e-18 seq1 107 3e-18 seq3 96.9 5e-15 seq4 93.3 6e-14 seq11 86.0 9e-12 >seq14 Length=174509413 Score = 120 bits (132), Expect = 5e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||| | |||||||||||||| ||||| ||||| ||||||||||||||||| || || Sbjct 117470544 AAGATTAAGGATAAAGAAGGTATTCCACCGGATCAGCAAAGGCTTATTTTTGCTGGGAAG 117470485 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || || ||| | | || || | |||||||||||||| || || | ||||||||| Sbjct 117470484 CAGTTGGAAGATGGGAGGACTTTGGCGGATTATAATATTCAGAAGGAGTTTACTTTGCAT 117470425 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||| | | |||||| Sbjct 117470424 CTGGTTTTACGACTTTGTGGTGGT 117470401 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||||||||| ||||| || ||||| ||| | ||||| || ||||| || ||| Sbjct 97878020 CAGGACAAAGAAGGTATCCCACCAGACCAACAGAGGTTGATTTTCGCTGGAAAGCAGTTA 97878079 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| | ||||| | | ||||| || || || ||||| ||||| | ||| | ||| Sbjct 97878080 GAGGATGGAAGAACACTTGCTGATTACAACATCCAGAAAGAGTCAACACTTCATCTTGTT 97878139 >seq15 Length=171247636 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || ||| | || ||||| Sbjct 26151395 ATGCAGATTTTCGTCAAGACTCTCACTGGGAAGACCATCACTTTGGAAGTTGAAAGCTCC 26151336 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || ||||||||||||||||| || || || || || Sbjct 26151335 GACACCATTGACAATGTGAAGGCAAAGATTCAAGATAAAGAAGGGATCCCGCCAGACCAG 26151276 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| |||||||| || ||| | || || | ||||| |||| || || || Sbjct 26151275 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAAGACGGCCGAACCTTAGCCGACTACAAC 26151216 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || ||| | |||||||| | ||| | ||||||||||| Sbjct 26151215 ATTCAGAAGGAGTCCACTCTTCATTTGGTGCTTCGTCTTCGAGGTGGTAT 26151166 >seq16 Length=188620566 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124632 GATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAG 124691 |||||||||||||| ||||| |||||||| |||||||||||||| || || || || || Sbjct 146055081 GATAAAGAAGGTATTCCACCGGATCAACAGAGGCTTATTTTTGCTGGGAAGCAGTTGGAA 146055140 Query 124692 GATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTA 124751 ||| | | || || | |||||||||||| || || || ||||||||| | |||||| Sbjct 146055141 GATGGGAGGACTTTGCCGGTTTATAATATTCAGAAGGAGTCTACTTTGCATCTAGTTTTA 146055200 Query 124752 CG 124753 || Sbjct 146055201 CG 146055202 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || ||||| || || ||| | ||| ||||| Sbjct 29321734 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAAAGTTCG 29321675 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || ||||||||||| || ||||| ||||| || || Sbjct 29321674 GACACCATTGACAATGTCAAAGCTAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAG 29321615 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || ||||| || || ||| | || || | | || || || Sbjct 29321614 CAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACTCTGGCTGACTACAAC 29321555 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || ||| | ||||||||| | ||| | || |||||||| Sbjct 29321554 ATCCAGAAGGAGTCTACTCTCCATTTGGTTCTTCGTCTTCGTGGTGGTAT 29321505 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | ||||| | || || || || || ||| | ||| | || Sbjct 106906441 ATGCAGATATTCGTCAAGACGTTGACTGGGAAGACGATTACTCTGGAGGTCGAGAGTTCG 106906500 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||| ||||||||||| || || || ||||| || || Sbjct 106906501 GATACGATTGACAATGTGAAGGCGAAGATTCAAGATAAGGAGGGGATTCCACCGGACCAG 106906560 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||| || || || || | |||||| | || || | | ||||| ||| Sbjct 106906561 CAGAGGTTGATTTTCGCTGGCAAGCAGCTCGAGGATGGGCGTACGCTGGCTGATTACAAT 106906620 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| ||| ||||| | || || | || | |||||||| Sbjct 106906621 ATTCAAAAGGAATCGACTCTGCATCTTGTGTTGAGGTTGAGGGGTGGTAT 106906670 >seq1 Length=153905722 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || || || || || ||| | || |||| ||| Sbjct 17864802 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACCATCACTCTTGAAGTTGAGAGCTCG 17864861 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || ||||||||||||||||| || ||||| || || Sbjct 17864862 -GATACGATTGACAATGTCAAGGCAAAGATTCAAGATAAAGAAGGGATCCCACCAGACCA 17864920 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| || ||||| || ||||| | || ||| | || || || | |||||||| Sbjct 17864921 ACAGAGGCTGATCTTTGCCGGTAAACAGCTGGAAGATGGGCGGACTTTGGCGGATTATAA 17864980 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | |||||||| | | || ||||||| || Sbjct 17864981 CATTCAGAAGGAATCTACGCTTCATTTGGTGCTGAGGTTGAGAGGTGGGAT 17865031 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| ||||||||||| ||||| || || || ||||| || || || ||||| Sbjct 17864430 AAAATCCAAGACAAAGAAGGTATTCCACCAGACCAGCAGAGGCTGATCTTCGCCGGAAAG 17864489 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || ||| | |||| || | ||||| || || || || || || ||| | ||| Sbjct 17864490 CAACTCGAAGATGGCAGAACCTTGGCGGATTACAACATCCAGAAGGAGTCCACTCTTCAT 17864549 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| | ||| | || || ||||| Sbjct 17864550 CTGGTCCTCCGTCTCCGTGGAGGTAT 17864575 >seq3 Length=168485022 Score = 96.9 bits (106), Expect = 5e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 ||||||| ||||||||||||| || || || || || ||| | | || |||| |||| Sbjct 118895760 ATCAACAGGGGCTTATTTTTGCTGGGAAGCAGTTGGAAGATGGGAGGACGTTAGCGGATT 118895701 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||| || || || ||||||||| |||||||||| | || |||||| Sbjct 118895700 ATAATATTCAGAAGGAGTCTACTTTGCATCTGGTTTTACGACTTCGTGGTGGT 118895648 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || ||||| || ||||| || ||| |||| | ||| Sbjct 118896079 ATGCAGATCTTTGTCAAAACCCTAACCGGAAAAACAATCACTCTAGAAGTCGAAAGCTCC 118896020 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | ||| || || ||||| |||||||| || ||||| |||||| Sbjct 118896019 GACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCGGATCAA 118895960 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || |||||||| | || || | |||| ||| ||||| || Sbjct 118895959 CAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGAGGGCAGAACCCTAGCCGATTACAAC 118895900 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | || | ||| | ||| | || || ||||| Sbjct 118895899 ATCCAAAAAGAATCCACCCTTCACCTCGTTCTTCGTCTCCGCGGCGGTAT 118895850 >seq4 Length=178899001 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 124632 GATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAG 124691 || ||||||||||| ||||| || ||||| ||| | || ||||| || || ||||||||| Sbjct 129284189 GACAAAGAAGGTATCCCACCAGACCAACAGAGGTTAATCTTTGCTGGGAAGCAATTAGAG 129284130 Query 124692 GATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||| | |||||| | | || || || || || ||||||||||| | ||| | ||||| Sbjct 129284129 GATGGGCGAACACTCGCTGACTACAACATCCAGAAAGAATCAACACTTCATCTTGTTTT 129284071 >seq11 Length=168460249 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || || || ||||| || | ||| | || Sbjct 109718291 ATGCAAATATTTGTGAAGACCCTGACCGGAAAGACTATCACGTTGGAGGTGGAGAGTTCG 109718232 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || ||||| |||||||| || || || || || || Sbjct 109718231 GATACTATCGATAACGTCAAGGCCAAGATTCAGGATAAAGAGGGCATCCCGCCAGACCAG 109718172 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| |||||||| ||||| ||| |||| || || | |||||||| Sbjct 109718171 CAGCGGTTGATCTTTGCCGGAAAACAGTTAGATGATGGTCGTACTTTGGCGGATTATAAC 109718112 Query 124719 ATTCAAAAAGAATCAAC 124735 || || || || || || Sbjct 109718111 ATCCAGAAGGAGTCTAC 109718095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755441570790400