Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 118 1e-21 seq17 95.1 1e-14 seq16 93.3 5e-14 seq15 87.8 2e-12 seq12 87.8 2e-12 seq11 84.2 3e-11 >seq4 Length=178899001 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | | |||||||| ||||| || ||||||||| || |||||||| || Sbjct 81195861 CCTCCCCTCAGCCTCAACACCAGATGCAGAGTCGACTCCTTTTGGATGTTGTAATCCGCA 81195920 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| |||| || | ||| ||||| || || ||||| | ||||||||| | || Sbjct 81195921 AGAGTCCTGCCGTCTTCCAACTGTTTACCCGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 81195980 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATTC 43132 | | |||||||||| ||| ||| ||| | ||| | | | |||||| ||| || Sbjct 81195981 ATACCCTCCTTGTCCTGGATCTTTGCTTTCA-CGTTGTCGATAGTGTCGGAGCTC---TC 81196036 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| || || || | ||||| |||||||||||||| Sbjct 81196037 GACCTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 81196087 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || |||||||||||| |||||||| || ||||||| |||| || Sbjct 81196335 ACCAAATGAAGAGTTGACTCCTTTTGAATGTTGTAATCGGCAAGAGTCCTGCCGTCCTCC 81196394 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||||||||||||||| || | || ||| ||||| | || | | ||||||||| | Sbjct 81196395 AACTGCTTACCAGCGAAGATCAATCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCTTGG 81196454 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | |||||| ||| || || | || || || ||| Sbjct 81196455 ATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCGACCTCAAGGGTAATCGTCTTG 81196514 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || ||||||||||| Sbjct 81196515 CCGGTTAGGGTTTTGACGAAGATTTGCAT 81196543 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || |||||||| |||| || || |||| || | |||||||| ||||| Sbjct 81196124 CTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTACCGGCGAA 81196183 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | || | | |||||||| | ||| | |||| ||||| Sbjct 81196184 GATCAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGT-CTTGAATCTTTGCTTTGACGT 81196242 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| ||| || || | |||||||| || || || | ||||| | Sbjct 81196243 TATCGATGGTATCGGAGCTTTCGACCTCAAGGGTGATGGTCTTACCAGTCAAAGTCTTCA 81196302 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 81196303 CAAAGATTTGCAT 81196315 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || |||||| || || ||||||||||| ||||| || |||| || Sbjct 81196563 ACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGGCCGTCTTCG 81196622 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || || |||||||| || | ||| |||||||| | || | | |||||||| | Sbjct 81196623 AGTTGTTTTCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGG 81196682 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 || || |||| ||| | | | ||||| ||| ||| || |||| || || || Sbjct 81196683 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCT---TTCAACCTCGAGGGTAATCGT 81196738 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| ||||| || || |||||||| ||||| Sbjct 81196739 CTTGCCAGTTAGGGTTTTGACAAAGATCTGCAT 81196771 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||||| || || |||| || | ||||| ||||| || Sbjct 81196808 CTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCGTCTTCCAATTGCTTTCCAGCAAA 81196867 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | | |||||||| ||| || |||| ||| Sbjct 81196868 GATCAATCGCTGCTGGTCAGGGGGAATCCCTTCCTTGTCTTGGATCTTAGCCTTGA-CGT 81196926 Query 43112 CG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| ||| || || |||| |||||||| || || || || |||| Sbjct 81196927 TGTCGATGGTGTCGGAACTC---TCGACCTCGAGAGTGATGGTCTTACCAGTGAGAGTCT 81196983 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 81196984 TAACGAAGATTTGCAT 81196999 >seq17 Length=214723238 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 || ||||||||||| | || |||||| || || ||||| || || || || | || Sbjct 210026234 CGTAACACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCG 210026293 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || ||||| ||||| ||||||||||| | || | || || ||| Sbjct 210026294 TCTTCGAGCTGTTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCTTTG 210026353 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| || || | ||| | | | |||||| ||||| || || | ||| || Sbjct 210026354 TCTTGGATCTTGGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGACCTCCAACGTTAT 210026412 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || |||||||| || || || ||||| ||||| || Sbjct 210026413 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 210026451 >seq16 Length=188620566 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || || | |||||| | ||||| || |||||||||||||||||||||||| Sbjct 106906667 CCACCCCTCAACCTCAACACAAGATGCAGAGTCGATTCCTTTTGAATATTGTAATCAGCC 106906608 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| |||||||| || | | ||||||||| | || Sbjct 106906607 AGCGTACGCCCATCCTCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGGTCCGGTGGA 106906548 Query 43077 ACGCTCTCCTTGTC 43090 | | |||||| || Sbjct 106906547 ATCCCCTCCTTATC 106906534 >seq15 Length=171247636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | | ||| | ||| | |||| |||||| ||||| ||||| || || Sbjct 34231186 CCTCCTCTAAGCCTGAGCACAAGATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCT 34231127 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || ||||| |||||||| || || | |||||||||||| | || Sbjct 34231126 AAAGTACGGCCATCTTCAAGCTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGTGGG 34231067 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||| || || ||| || |||| | | | ||||| ||| ||| Sbjct 34231066 ATGCCCTCTTTATCTTGGATCTTAGCCTTGACATTATCAATGGTGTCTGAGCT---TTCA 34231010 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || |||| ||||| |||||||| ||||| Sbjct 34231009 ACTTCCAAAGTGATTGTCTTTCCGGTTAAAGTCTTAACAAAGATCTGCAT 34230960 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | ||||||||| | ||| || || || || |||||||| ||| Sbjct 26151625 CCACCTCTGAGGCGGAGCACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCTGCC 26151684 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || |||| || |||||||||||||| || || || | ||| ||||| | || Sbjct 26151685 AAAGTACGACCGTCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGG 26151744 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| ||||| ||| || ||| | | | | || ||| ||| || Sbjct 26151745 ATCCCCTCTTTGTCTTGGATCTTGGCTTTAACATTGTCGATGGTATCGGAACTTTCAACT 26151804 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || || || || || ||||| || ||||||||||| Sbjct 26151805 TCCAATGTGATCGTCTTCCCGGTGAGAGTCTTGACGAAGATTTGCAT 26151851 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | | ||| | ||| | |||| |||||| ||||| ||||| || || Sbjct 34348589 CCTCCTCTAAGCCTGAGCACAAGATGGAGTGTGGACTCCTTCTGAATGTTGTAGTCGGCT 34348530 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || ||||| ||||| || || || | |||||||||||| | || Sbjct 34348529 AAAGTACGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCGCTGCTGGTCAGGTGGG 34348470 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||| || || ||| || |||| | | | ||||| ||| ||| Sbjct 34348469 ATGCCCTCTTTATCTTGGATCTTAGCCTTGACATTATCAATGGTGTCTGAGCT---TTCA 34348413 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || |||| ||||| |||||||| ||||| Sbjct 34348412 ACTTCCAAAGTGATTGTCTTTCCGGTTAAAGTCTTAACAAAGATCTGCAT 34348363 >seq12 Length=166489593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || |||||| || || ||||| || || || || | |||| || Sbjct 69697770 ACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCGTCCTCC 69697829 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| || || ||||| ||||| || || ||||| | || | || || ||||| | Sbjct 69697830 AGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCCGGTGGGATGCCTTCTTTGTCTTGG 69697889 Query 43095 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||||| || | ||| | | | ||||| ||||| || || | || || ||||| Sbjct 69697890 ATTTTGGACTTTA-CGTTGTCGATTGTGTCTGAGGATTCGACCTCTAGGGTTATTGTTTT 69697948 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||||||| || ||||| ||||| |||||| || || Sbjct 69697949 GCCCGTTAAGGTTTTTACGAAGATCTGCATTGTTGCG 69697985 >seq11 Length=168460249 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| || |||||||| |||||||| | ||||| | || ||||| || || Sbjct 109471810 CTCTTTCTGAATGTTATAATCAGCAAGAGTCCGACCATCATCCAATTGTTTACCCGCAAA 109471869 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||||| | || | | ||| |||||| ||| |||||| |||| Sbjct 109471870 GATTAACCGCTGCTGGTCAGGTGGGATCCCCTCTTTGTCC-TGAATTTTTGCCTTGACAT 109471928 Query 43111 TCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | || || || ||| ||||| || | ||||| || || ||||||| |||| Sbjct 109471929 TATCAACAGTATC---CGAACTCTCCACTTCCAGAGTGATCGTCTTCCCCGTTAAGGTCT 109471985 Query 43168 TTACAAAGATTTGCATT 43184 | || || || |||||| Sbjct 109471986 TGACGAATATCTGCATT 109472002 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| || |||||||| |||||||| | ||||| | || ||||| || || Sbjct 109717470 CTCTTTCTGAATGTTATAATCAGCAAGAGTCCGACCATCATCCAATTGTTTACCCGCAAA 109717529 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||||||| ||| | | ||| |||||| ||| |||||| |||| Sbjct 109717530 GATTAACCGCTGCTGGTCGGGCGGGATCCCCTCTTTGTCC-TGAATTTTTGCCTTGACAT 109717588 Query 43111 TCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | || || || ||| || || || | ||||| || || ||||| | |||| Sbjct 109717589 TATCAACAGTATC---CGAACTCTCGACCTCTAGAGTGATCGTCTTCCCCGTCAAGGTCT 109717645 Query 43168 TTACAAAGATTTGCAT 43183 | || || || ||||| Sbjct 109717646 TGACGAATATCTGCAT 109717661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571806678283840