Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq14 107 3e-18 seq16 87.8 3e-12 seq4 86.0 9e-12 >seq14 Length=174509413 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| ||| |||| ||| |||||| | || || ||||||||||| | Sbjct 117470402 CCACCACAAAGTCGTAAAACCAGATGCAAAGTAAACTCCTTCTGAATATTATAATCCGCC 117470461 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| || | ||| || || || || ||||||||||| | |||||||||||||| ||| Sbjct 117470462 AAAGTCCTCCCATCTTCCAACTGCTTCCCAGCAAAAATAAGCCTTTGCTGATCCGGTGGA 117470521 Query 146171 ATTCCTTCTTTATC 146184 || ||||||||||| Sbjct 117470522 ATACCTTCTTTATC 117470535 >seq16 Length=188620566 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCT 146118 ||||| ||| || | ||| |||||||| || || ||||||||| | | | ||| || Sbjct 146055206 AAGTCGTAAAACTAGATGCAAAGTAGACTCCTTCTGAATATTATAAACCGGCAAAGTCCT 146055147 Query 146119 GCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTC 146178 | ||| || || || || ||||||||||| | || || |||||||| ||||| ||||| Sbjct 146055146 CCCATCTTCCAACTGCTTCCCAGCAAAAATAAGCCTCTGTTGATCCGGTGGAATACCTTC 146055087 Query 146179 TTTATC 146184 |||||| Sbjct 146055086 TTTATC 146055081 >seq4 Length=178899001 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| | ||| || || || || || ||||| | Sbjct 81196545 CCACCACGAAGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAATCAGCT 81196604 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| || || || | |||||||||||| || ||||||| |||||| || || || Sbjct 81196605 AGAGTTCGGCCGTCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGG 81196664 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 81196665 ATTCCTTCCTTGTCTTG 81196681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743512198645760