Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq15 172 5e-38 >seq15 Length=171247636 Score = 172 bits (190), Expect = 5e-38 Identities = 565/870 (65%), Gaps = 15/870 (2%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||| |||||||| || || ||||| || | ||| ||||| ||||| ||||| || || Sbjct 39549396 ATTCGACATAACCGAGGCCTTCTGATACTCCCCAACCCTCTTCTCAAAAAAATTCGTCTT 39549455 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATC 16044 || | || ||||| ||||| ||||||| ||||| | ||| |||| || Sbjct 39549456 CCCCTGCAACGAAATCAACTCCATCCAATCAAACGGATTCGACACGCCATACAATTTCTC 39549515 Query 16045 GCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC 16104 ||||| || | || || |||||||| ||||| || |||||||| |||| || | Sbjct 39549516 ACATCCTAACGACCCCAGCAACCTATCCGCAACAAACTCAATATACTGACTCATCAACCC 39549575 Query 16105 ACAGTTCATTCCTATTAATTTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTATAT 16163 || ||||| || | || | ||||| | || || | ||| | | || || | Sbjct 39549576 ACCATTCATCCCAACCAACCCA-CAGGGTAAGGCATCACAAACAAACTCCCTCTCAATCT 39549634 Query 16164 TAACCGCTTCAATGATTATATCTCTTACTACACT----ATTTAACGGAGGGTTTAATAAG 16219 ||||| || | || || | || | || | | ||| | || || || Sbjct 39549635 CCACCGCATCCGCCACAATCCCTTTCACC-CGCTCCTCACTCAACTTTGTATTCAACAAC 39549693 Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 | || ||| | ||||| ||||| |||||||| || ||||| | ||| |||||| Sbjct 39549694 T---TATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCG 39549750 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 || || || || | ||| ||||| | || || || || | ||| || ||||| ||| Sbjct 39549751 TTCGAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCACAAAAG 39549810 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT 16399 ||||||||||||||| |||||||| |||||| |||| | || ||| | ||| | Sbjct 39549811 CTACCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAACGAT 39549870 Query 16400 CTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATG 16459 | | || || ||||| || | |||||||| || |||| | ||||| || Sbjct 39549871 ---TCTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATT 39549927 Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 |||| || ||| || ||| |||||||| |||| || || | || | Sbjct 39549928 GTCTCAATAGCACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAAC 39549987 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCAT 16579 || ||||| |||||||| || || |||||||| || || || ||||| || |||||| Sbjct 39549988 AGCAAACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCA 39550047 Query 16580 CTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATT 16639 | || ||||| || |||||||| || | | || | |||||| || || Sbjct 39550048 CGCGCCTCGGAGATCTGTACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATG 39550107 Query 16640 CCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTG-A 16698 || || || || || || || |||| ||| |||| || | |||||| || | Sbjct 39550108 CCGTCTGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTT 39550167 Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 ||| | ||||| |||| |||||| ||||| |||||| | ||||| || || Sbjct 39550168 AAGGAGT-CCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGA 39550226 Query 16759 AGCAACAGCCTTTTTATACATTTTCCATAT 16788 || | |||||||| ||||||| ||| || Sbjct 39550227 GGCTTCGGCCTTTTTGTACATTTCCCAGAT 39550256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462503166020800