Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq15 113 4e-20 seq14 105 6e-18 >seq15 Length=171247636 Score = 113 bits (124), Expect = 4e-20 Identities = 235/345 (68%), Gaps = 5/345 (1%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || ||||| ||||| | ||||| |||| || | ||||| || || ||| Sbjct 39549703 AAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTT 39549762 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 14319 || || |||||||| || || || || ||||| || || ||| | || | | || ||||| Sbjct 39549763 AAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCA-CAAAAGCTACCAGAAAA 39549821 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||||||||| ||||| ||||| || |||| || ||| |||||||| || | | Sbjct 39549822 GAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAACGATTCTGAACCG-T 39549880 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 || ||||| || | ||||| | | ||||| | | | | ||||| |||||||| Sbjct 39549881 CG--ATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCTCAATAGC 39549938 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 | || ||| | | || || || | | ||||| | || | || || || || Sbjct 39549939 ACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTA 39549998 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14544 |||||||||||| || || || || || || ||||| || ||||| Sbjct 39549999 CATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAA 39550043 >seq14 Length=174509413 Score = 105 bits (116), Expect = 6e-18 Identities = 235/348 (68%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257 || || ||||| ||||| || || | || ||||||| || | ||||||||| ||| Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 14258 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 14317 || | ||| ||||| || || || ||||| | ||| ||||| ||| ||| ||| || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAG 142132968 Query 14318 AAGAATATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376 ||||||||||| || || ||| ||||| || || | || ||| |||||||| | | Sbjct 142132967 AAGAATATTCCTTCGAC-GCAGGCAAAAGCAATGATCCGCTCTGCAAACGATTCGGATCC 142132909 Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 | ||| |||||||| ||||| | | ||| || | || | || |||||||| Sbjct 142132908 G-TCG--ATCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAAT 142132852 Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14496 || ||||| | | | ||| || | | | | ||||| | || | | | || Sbjct 142132851 CGCGCGAAATAGACGATTCTTTTCAGTGGAATCTTTGATGTAGGATTCGAGTAACAGACT 142132792 Query 14497 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14544 ||||| || ||||| |||||||| || || || ||||| || || || Sbjct 142132791 GTACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAA 142132744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482336387199040