Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 2e-11 seq1 84.2 2e-11 seq15 82.4 6e-11 >seq3 Length=168485022 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || ||||||||||| |||||||| ||||| Sbjct 118895853 CCGCCGCGGAGACGAAGAACGAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAATCGGCT 118895912 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| | ||||| || || |||| || | |||||||||| || Sbjct 118895913 AGGGTTCTGCCCTCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGATCCGGTGGG 118895972 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || || | | || ||||| | | | ||||| | ||| Sbjct 118895973 ATTCCTTCTTTGTCTTGGATCT-TGGCTTTGACGTTGTCGATTGTGTCGGAGCTTTCGAC 118896031 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 ||| | ||||| |||| ||||| | ||||| ||||| || ||||| ||| || Sbjct 118896032 TTCTAGAGTGATTGTTTTTCCGGTTAGGGTTTTGACAAAGATCTGCATGTTTGAA 118896086 >seq1 Length=153905722 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| | || || || | ||||||||| ||||| || || ||||||||||| || Sbjct 17864344 CCTCCCCTCAATCGGAGAACAAGGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGCG 17864285 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| | |||||| || || ||||||| |||||||| || ||| Sbjct 17864284 AGGGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATAAGCCTTTGTTGGTCTGGGGGG 17864225 Query 18219 ACGCCTTCCTTATC 18232 | |||||||| || Sbjct 17864224 ATTCCTTCCTTGTC 17864211 >seq15 Length=171247636 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || || || || | |||||| ||||| || || || ||||||||||| ||| Sbjct 34230958 CCACCCCTCAGCCTGAGCACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCC 34230899 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||| | ||||| || ||| ||||||| || || || || || Sbjct 34230898 AAAGTACGGCCGTCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 34230839 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||| | |||||| | ||| || ||| |||| Sbjct 34230838 ATCCCTTCTTTGTCCTGAATCTTGGCCTTGACATTGTCAATTGTATCAGAACTCTCGACC 34230779 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| |||||| | || ||||| || ||||| || |||||||||||| Sbjct 34230778 TCAAGAGTGATGGTCTTCCCGGTTAAAGTTTTCACGAAAATTTGCATT 34230731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379336935666360