Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 4e-14 seq12 84.2 2e-11 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 ||||||||||| || || |||||||| || || ||||| || | || || || ||| Sbjct 109472001 ATGCAGATATTCGTCAAGACCTTAACGGGGAAGACGATCACTCTGGAAGTGGA---GAGT 109471945 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || | ||| || | ||| |||| ||||||| | ||||| || | || |||| Sbjct 109471944 TCGGATACTGTTGATAATGTCAAGGCAAAAATTCAGGACAAAGAGGGGATCCCACCTGAC 109471885 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| || ||||| | |||||| |||||| |||| ||| |||| | ||||| Sbjct 109471884 CAGCAGCGGTTAATCTTTGCGGGTAAACAATTGGATGATGGTCGGACTCTTGCTGATTAT 109471825 Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034 | ||| ||||||||| | || ||||| Sbjct 109471824 AACATTCAGAAAGAGTCTACCCTTCA 109471799 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 ||||||||||| || || ||||| || || || ||||| || | || ||||| ||| Sbjct 109717661 ATGCAGATATTCGTCAAGACCTTGACGGGGAAGACGATCACTCTAGAGGTCGA---GAGT 109717605 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || | ||| || | ||| |||| ||||||| | ||||| || | ||| ||| Sbjct 109717604 TCGGATACTGTTGATAATGTCAAGGCAAAAATTCAGGACAAAGAGGGGATCCCGCCCGAC 109717545 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| || ||||| | |||||| |||||| |||| ||| |||| | ||||| Sbjct 109717544 CAGCAGCGGTTAATCTTTGCGGGTAAACAATTGGATGATGGTCGGACTCTTGCTGATTAT 109717485 Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034 | ||| ||||||||| | || ||||| Sbjct 109717484 AACATTCAGAAAGAGTCTACCCTTCA 109717459 >seq12 Length=166489593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || ||||||||||| |||||||| |||||| | || |||||||| Sbjct 69697978 ATGCAGATCTTCGTAAAAACCTTAACGGGCAAAACAATAACCCTAGAGGTCGAATCCTCA 69697919 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | || ||| ||||| | ||||||||| | || ||||| Sbjct 69697918 GACACAATCGACAACGTAAAGTCCAAAATCCAAGACAAAGAAGGCATCCCACCGGACCAA 69697859 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| | || | || || ||||| ||||| || || || | || |||| | Sbjct 69697858 CAACGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCAGAACCCTAGCGGACTACAAC 69697799 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || ||||| ||| | ||||| ||||| || Sbjct 69697798 ATCCAGAAGGAGTCAACGCTCCATTTGGT 69697770 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| |||| || || ||||| || | || |||||||| | Sbjct 157664241 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACGATCACGTTGGAGGTCGAATCCTCC 157664182 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | || |||| ||| || | || |||||| | || |||||| Sbjct 157664181 GACACGATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCACCGGACCAG 157664122 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| |||| | || || ||||| || ||||| || || | ||||||| | Sbjct 157664121 CAACGGCTAATTTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTAGCGGATTACAAC 157664062 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || ||||| ||| | || || ||| | ||||| || Sbjct 157664061 ATCCAGAAGGAGTCGACTCTGCATCTGGTGTTGCG 157664027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418296210133760