Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq14 221 2e-52 seq15 197 2e-45 seq9 98.7 1e-15 >seq14 Length=174509413 Score = 221 bits (244), Expect = 2e-52 Identities = 425/622 (68%), Gaps = 10/622 (2%) Strand=Plus/Minus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 ||||| || |||||||||||||| | ||| || |||| ||||||||||| || || Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || ||||| ||||||| || |||||||| ||||| ||||| | | ||| ||| || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAG 142132968 Query 33696 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGC 33750 ||||| |||||||| || ||| ||||| ||||| | | |||| || ||| ||| | Sbjct 142132967 AAGAATATTCCTTCGAC-GCAGGCAAAAGCAATGATCCGCTCTGCA-AACGATTCGGATC 142132910 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||||| || | ||||||| ||| ||||| | | || || || ||||| | Sbjct 142132909 CGTC---GATCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAA 142132853 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | || ||| ||| || |||||| | |||||| | || | |||| || |||| Sbjct 142132852 TCGCGCGAAATAGACGATTCTTTTCAGTGGAATCTTTGATGTAGGATTCGAGTAACAGAC 142132793 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | ||||| || || || |||||||||||||| || ||||| |||||||| | |||| Sbjct 142132792 TGTACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCACGCGCCT 142132733 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| ||||| ||||| | ||||| | || | ||||| || || || || Sbjct 142132732 CGGCGATCTGGACTTCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCGTCTG 142132673 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 || || || || || | || || | || || | |||| | ||||| | | Sbjct 142132672 AAGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAGGGTTT 142132613 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | | | |||| || | || |||||||| ||||||| ||||| ||||| | Sbjct 142132612 CCCATTGACGGTGGTCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGCCTCGG 142132553 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 34170 | ||||| ||||| | |||||| | | |||||||||||||| || || | | || Sbjct 142132552 CTTTTTTGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACATGCAGAAGCGGTCTG 142132493 Query 34171 GATTTGGTGCAAGGATAGGTTC 34192 | ||||| || || | ||| || Sbjct 142132492 GGTTTGGGGCGAGTAGAGGCTC 142132471 >seq15 Length=171247636 Score = 197 bits (218), Expect = 2e-45 Identities = 426/630 (68%), Gaps = 14/630 (2%) Strand=Plus/Plus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 ||| ||| ||| || ||||||||||| |||| ||||||||||| || || ||||| Sbjct 39549694 TTATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTC 39549753 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || ||||| | || ||||| | |||||||| || | ||| || || | | | || | | Sbjct 39549754 GAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCA-CAAAAGCT 39549812 Query 33690 -CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33748 || |||||||| |||||||| || ||||||||||| | ||||||| | || || Sbjct 39549813 ACCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGC--AAACGAT 39549870 Query 33749 GCTG--TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 ||| | | |||||||| ||||||| ||||| || | |||||| || || || Sbjct 39549871 TCTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTC 39549930 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 || || ||| || | | |||||||||| | |||||| | || | || | || Sbjct 39549931 TCAATAGCACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGC 39549990 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 | ||| |||||||| || || || || ||||| || || ||||| ||||| || | Sbjct 39549991 AAACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGC 39550050 Query 33927 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCA 33986 ||||||| ||||| |||||| | || || | || | ||||| || || || Sbjct 39550051 GCCTCGGAGATCTGTACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCG 39550110 Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 34046 || || || || || || | ||| || | || || | ||||| ||| || Sbjct 39550111 TCTGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGT----TGTCGGT 39550166 Query 34047 T---TATTCCAATCATTGAT-ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 | | ||| | ||| | |||| |||| || |||||||| | ||||| ||||| Sbjct 39550167 TAAGGAGTCCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGA 39550226 Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || || |||||||| ||||| | |||||| | | |||||||||||||| || || Sbjct 39550227 GGCTTCGGCCTTTTTGTACATTTCCCAGATTTGTGGGTATTGGATTGGGAACATGCAGAA 39550286 Query 34163 TCTATTTGGATTTGGTGCAAGGATAGGTTC 34192 ||| | || ||||| | ||||| || || Sbjct 39550287 TCTGTCGGGGTTTGGGGTTAGGATTGGGTC 39550316 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| |||| ||| |||||||| || || ||||| | | || | | || Sbjct 145648153 GTCCCTGCATTGAATAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAATGA 145648212 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||| || | || || || || || ||||| || || | || | ||| ||| Sbjct 145648213 TAAGTCTTGATTACCGAATCAATGTCATCTTTGTGAATCCCAACCGAAACCCTCATCAAC 145648272 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 || || |||||||||||||||| || || ||||| | || || | || | Sbjct 145648273 ATATGTTGAGGTCTTTCAACAACCTTCCCTCCAATCTTCAATAGATATGACCTCTCAAGG 145648332 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||||||||||||||| | || |||||| || ||||| ||||| Sbjct 145648333 GTTTTAAAACCAAAATAATCATAATCAAAGTCCCGATCGTATATAAT 145648379 >seq9 Length=209865144 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | ||| |||||||| || || ||||| ||| || | | || Sbjct 123174741 GTCCCTGCATTGAAGAGGGTGGGAGAAGCATGTGTGAACCACCTTTGTGACATCAAATGA 123174800 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||| || | || || || || || ||||| || ||||| || | ||| | | Sbjct 123174801 TAAGTCTTGATGACAGAATCAATGTCATCTTTGTGAATCCCAACTGCAACCCTCATCAGC 123174860 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 || || ||||||||||| |||| || || || ||||||| ||| ||| | || | Sbjct 123174861 ATATGTTGAGGTCTTTCCACAACCTTCCCTTTGATCTTCAACAGGTATGATCTCTCAAGT 123174920 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||||| |||||||| | || |||||| || ||||| || || Sbjct 123174921 GTTTTAAAGCCAAAATAATCATAATCAAAGTCCCGATCGTATATGAT 123174967 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 ||||| ||||| | || | ||||| | || | || | ||||||||| ||||| || Sbjct 123174121 CCTCCTTGATCAACATAACGGGCGGTATCGTTGAAGACACGCAACATTGGGATAATGCCA 123174180 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || ||| ||||||| || ||| || || | || | | |||||| ||| || || Sbjct 123174181 TTGGATGTACCATTTGTCCCGCGTATGTAACTCCCTGTCGAACGAATGTTATGAACAGAA 123174240 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| || || ||||| ||| ||| | || ||| || || |||||||| ||| Sbjct 123174241 ACACCAATCCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 123174300 Query 63603 CCTTCTATGCTATCATCGATCATG 63626 ||||| ||||||||||| ||||| Sbjct 123174301 CCTTCAATGCTATCATCTTTCATG 123174324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629805570483840