Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq15 140 3e-28 >seq15 Length=171247636 Score = 140 bits (154), Expect = 3e-28 Identities = 376/569 (66%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 11618 TTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTA 11677 ||| ||| || || || ||||| ||||| ||||| ||||||| ||| | || || Sbjct 39549694 TTATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTC 39549753 Query 11678 GAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA 11737 || || ||||| || |||||||| || || || || | ||| || |||||| ||| | Sbjct 39549754 GAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCACAAAAGCTA 39549813 Query 11738 CCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTG 11797 ||||||||||||||||| || ||| ||||| || | || ||| ||| | | || | Sbjct 39549814 CCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGC--AAACGATT 39549871 Query 11798 TTG--CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTT 11855 || | ||||| || | ||||||| || || || | ||| ||| ||||| | Sbjct 39549872 CTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCT 39549931 Query 11856 CTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATA 11915 | ||||| || ||| | ||||||| | | |||| | | || | || | | | Sbjct 39549932 CAATAGCACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCA 39549991 Query 11916 AACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTG 11975 |||| |||||||| || || ||||| || || || |||||||| || || || || | Sbjct 39549992 AACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGCG 39550051 Query 11976 CCTCTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCA 12034 |||| || |||||| || ||| || | | || | || || |||||| || Sbjct 39550052 CCTCGGAGATCTGTACTTCTTTCAT-GAAGCGGCCAGCGAGGTTTTCCAATACAATGCCG 39550110 Query 12035 TCACTAGATGCA---AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTT 12091 || |||||| || || || |||| || | || |||| ||||| | ||| Sbjct 39550111 TC---TGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTT 39550167 Query 12092 AATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTT 12151 || ||||| | | | |||| |||||| || |||||||| ||||||| || Sbjct 39550168 AAGGAGTCCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAG 39550227 Query 12152 GCCACTGATTGTTTATACATTTTCCAGAT 12180 || | | | ||| ||||||| |||||| Sbjct 39550228 GCTTCGGCCTTTTTGTACATTTCCCAGAT 39550256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468515851176320