Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq15 140 3e-28
>seq15
Length=171247636
Score = 140 bits (154), Expect = 3e-28
Identities = 376/569 (66%), Gaps = 12/569 (2%)
Strand=Plus/Plus
Query 11618 TTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTA 11677
||| ||| || || || ||||| ||||| ||||| ||||||| ||| | || ||
Sbjct 39549694 TTATACAGCAAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTC 39549753
Query 11678 GAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA 11737
|| || ||||| || |||||||| || || || || | ||| || |||||| ||| |
Sbjct 39549754 GAGAACGTTAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCACAAAAGCTA 39549813
Query 11738 CCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTG 11797
||||||||||||||||| || ||| ||||| || | || ||| ||| | | || |
Sbjct 39549814 CCAGAAAAGAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGC--AAACGATT 39549871
Query 11798 TTG--CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTT 11855
|| | ||||| || | ||||||| || || || | ||| ||| ||||| |
Sbjct 39549872 CTGAACCGTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCT 39549931
Query 11856 CTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATA 11915
| ||||| || ||| | ||||||| | | |||| | | || | || | | |
Sbjct 39549932 CAATAGCACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCA 39549991
Query 11916 AACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTG 11975
|||| |||||||| || || ||||| || || || |||||||| || || || || |
Sbjct 39549992 AACTGTACATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGCG 39550051
Query 11976 CCTCTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCA 12034
|||| || |||||| || ||| || | | || | || || |||||| ||
Sbjct 39550052 CCTCGGAGATCTGTACTTCTTTCAT-GAAGCGGCCAGCGAGGTTTTCCAATACAATGCCG 39550110
Query 12035 TCACTAGATGCA---AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTT 12091
|| |||||| || || || |||| || | || |||| ||||| | |||
Sbjct 39550111 TC---TGATGCAGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTT 39550167
Query 12092 AATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTT 12151
|| ||||| | | | |||| |||||| || |||||||| ||||||| ||
Sbjct 39550168 AAGGAGTCCCAGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAG 39550227
Query 12152 GCCACTGATTGTTTATACATTTTCCAGAT 12180
|| | | | ||| ||||||| ||||||
Sbjct 39550228 GCTTCGGCCTTTTTGTACATTTCCCAGAT 39550256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468515851176320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |