Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15 228 1e-54 seq14 210 3e-49 seq9 102 1e-16 >seq15 Length=171247636 Score = 228 bits (252), Expect = 1e-54 Identities = 602/909 (66%), Gaps = 14/909 (2%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || || || || || | || || |||||||| || || || | ||| || || Sbjct 39549415 TTCTGATACTCCCCAACCCTCTTCTCAAAAAAATTCGTCTTCCCCTGCAACGAAATCAAC 39549474 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| | || ||| | ||| | | |||| || | | Sbjct 39549475 TCCATCCAATCAAACGGATTCGACACGCCATACAATTTCTCACATCCTAACGACCCCAGC 39549534 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 || |||||||| ||||| || ||||| |||||| ||| |||||| || | | Sbjct 39549535 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACCCACCATTCATCCCAACCAAC 39549594 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | || | || || || ||| || ||||| |||||||| | | ||| Sbjct 39549595 CCACAGGGTAAGGCATCACAAACAAACTCCCTCTCAATCTCCACCGCATCCGCCACAATC 39549654 Query 49909 GATCTAACGGTTTCTTCACTCGG---TGGATGCAATAAATGTTTAAACATCAAACATGCG 49965 | | || || |||||| || || ||| || | || ||| ||| || ||| Sbjct 39549655 CCTTTCACCCGCTCCTCACTCAACTTTGTATTCAACAACT---TATACAGCAAGCAAGCG 39549711 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 |||||||| |||| ||||||||||| || | ||||| || ||||| | || ||| Sbjct 39549712 AAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGC 39549771 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ACCCAGAAAAGAAGATTCC 50084 || | |||||||| || | ||| || || | | |||| | ||||||||||| ||||| Sbjct 39549772 ATCAACCCACGCTTCTTCAACCAGAAAATAG-CACAAAAGCTACCAGAAAAGAATATTCC 39549830 Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG--TCATGTATCCAC 50142 ||| || ||||||||||| | ||||||| || ||| | ||| | | |||||| Sbjct 39549831 TTCAACACAGGCAAAGGCAATTATTCTCTCTGCA-AAC-GATTCTGAACCGTCGATCCAC 39549888 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 || ||||||| ||||| || | |||||| || || || || || ||| || | | Sbjct 39549889 TTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCTCAATAGCACGGAACAAA 39549948 Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262 |||||||||| | |||||| | || | || | || | ||| |||||||| || Sbjct 39549949 CGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTACATTTCAGAG 39550008 Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322 || || || ||||| || || ||||| ||||| || | ||||||| ||||| ||| Sbjct 39550009 TGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGCGCCTCGGAGATCTGTACT 39550068 Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 ||| | || || |||| | ||||| || || ||||| || || || || Sbjct 39550069 TCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCGTCTGATGCAGCGAAGAAG 39550128 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGAT- 50441 || | ||| || | || || || ||||||| |||| | ||| | ||| | Sbjct 39550129 GCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTTA-AGGAGTCCCAGTGTTGTTG 39550187 Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 |||| |||| || |||||||| | ||||| ||||| || || |||||||| ||||| Sbjct 39550188 GTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAGGCTTCGGCCTTTTTGTACAT 39550247 Query 50502 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 50561 | |||||| | | |||||||||||||| || ||||| | || ||||| | || Sbjct 39550248 TTCCCAGATTTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCGGGGTTTGGGGTTAG 39550307 Query 50562 GATCGGTTC 50570 ||| || || Sbjct 39550308 GATTGGGTC 39550316 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| || || | |||| ||| || | ||| | || | || |||||| ||||| ||| Sbjct 145647816 CCTCCTTGGTCAACATATCGAGCAGTATCGTTAAAGACACGCAGCATTGGGATAATGCCA 145647875 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||||||||| || || || || |||||| | | ||| |||||| ||| || Sbjct 145647876 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAATAGAG 145647935 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| ||||| ||| ||| | || ||| || || ||||| || ||| Sbjct 145647936 ACACCAATTCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCGTATATG 145647995 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| |||||||| || ||||| | || ||||||||| Sbjct 145647996 CCCTCAATGCTATCGTCTTTCATGCATAACAGGAAACAGCTA 145648037 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| |||| ||| |||||||| || || ||||| | | |||| | || Sbjct 145648153 GTCCCTGCATTGAATAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAATGA 145648212 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||| || | || || || || || ||||| || |||| || | ||| ||| Sbjct 145648213 TAAGTCTTGATTACCGAATCAATGTCATCTTTGTGAATCCCAACCGAAACCCTCATCAAC 145648272 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 || || |||||||||||||| | ||| || ||||| | || || | || | Sbjct 145648273 ATATGTTGAGGTCTTTCAACAACCTTCCCTCCAATCTTCAATAGATATGACCTCTCAAGG 145648332 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||||||||||||||| | || |||||| || ||||| ||||| Sbjct 145648333 GTTTTAAAACCAAAATAATCATAATCAAAGTCCCGATCGTATATAAT 145648379 >seq14 Length=174509413 Score = 210 bits (232), Expect = 3e-49 Identities = 401/585 (69%), Gaps = 8/585 (1%) Strand=Plus/Minus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 ||||| || |||||||||||||| | ||| || |||| |||| |||||| || || Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGA 50072 || ||||| ||||||| || |||||||| ||||| ||||| | | || | | || || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCG-CACAGAAGCTTCCTGA 142132969 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACT-GGCGCT 50129 ||||| |||||||| || |||||| |||| | | |||| || | | | || | Sbjct 142132968 GAAGAATATTCCTTCGACGCAGGCAAAAGCAATGATCCGCTCTGCAAACGATTCGGATCC 142132909 Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 ||| ||||| || | ||||||| ||| ||||| | | || || || ||||| || Sbjct 142132908 GTCG---ATCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAAT 142132852 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 || ||| ||| || |||||| | |||||| | || | |||| || ||||| Sbjct 142132851 CGCGCGAAATAGACGATTCTTTTCAGTGGAATCTTTGATGTAGGATTCGAGTAACAGACT 142132792 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||| || || || |||||||||||||| || ||||| |||||||| | ||||| Sbjct 142132791 GTACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCACGCGCCTC 142132732 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 || ||||| ||||| | ||||| | || | ||||| || || ||||| Sbjct 142132731 GGCGATCTGGACTTCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCGTCTGA 142132672 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT 50429 || || || || || | || || | || || || |||| | ||||| | | Sbjct 142132671 AGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAGGGTTTC 142132612 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||| | | | |||| || | ||||||||||| ||||||| ||||| ||||| || Sbjct 142132611 CCATTGACGGTGGTCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGCCTCGGC 142132552 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||||| ||||| | |||||| | | |||||||||||||| || Sbjct 142132551 TTTTTTGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACAT 142132507 >seq9 Length=209865144 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| ||||| | || | ||||| | || | || | ||||||||| ||||| ||| Sbjct 123174121 CCTCCTTGATCAACATAACGGGCGGTATCGTTGAAGACACGCAACATTGGGATAATGCCA 123174180 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||||||||| |||||| || || || || | | |||||| ||| || || Sbjct 123174181 TTGGATGTACCATTTGTCCCGCGTATGTAACTCCCTGTCGAACGAATGTTATGAACAGAA 123174240 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || || ||||| ||| ||| | || ||| || || || ||||| ||| Sbjct 123174241 ACACCAATCCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 123174300 Query 80275 CCCTCTATGCTATCATCAATCATG 80298 || || ||||||||||| ||||| Sbjct 123174301 CCTTCAATGCTATCATCTTTCATG 123174324 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | ||| |||||||| || || ||||| ||| |||| | || Sbjct 123174741 GTCCCTGCATTGAAGAGGGTGGGAGAAGCATGTGTGAACCACCTTTGTGACATCAAATGA 123174800 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||| || | || || || || || ||||| || || || || | ||| | | Sbjct 123174801 TAAGTCTTGATGACAGAATCAATGTCATCTTTGTGAATCCCAACTGCAACCCTCATCAGC 123174860 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 || || ||||||||||| || | ||| || || ||||||| ||| ||| | || | Sbjct 123174861 ATATGTTGAGGTCTTTCCACAACCTTCCCTTTGATCTTCAACAGGTATGATCTCTCAAGT 123174920 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||| |||||||| | || |||||| || ||||| || || Sbjct 123174921 GTTTTAAAGCCAAAATAATCATAATCAAAGTCCCGATCGTATATGAT 123174967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718255081065920