Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq15 111 2e-19 seq14 91.5 1e-13 >seq15 Length=171247636 Score = 111 bits (122), Expect = 2e-19 Identities = 233/345 (68%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || || ||||| ||||| | ||||| |||| || | ||||| || || ||| Sbjct 39549703 AAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTT 39549762 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 || || |||||||| || || || || ||||| || || ||| ||| || |||||| Sbjct 39549763 AAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCACAAAAGCTACCAGAAAAG 39549822 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 |||||||| ||||| ||||| || |||| || ||| |||||||| || | || Sbjct 39549823 AATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAACGATTCTGAACCG-TC 39549881 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | ||||| || | ||||| | | ||||| | | | | ||||| ||||||||| Sbjct 39549882 G--ATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCTCAATAGCA 39549939 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || ||| | || || || | | ||||| | || | || || || ||| Sbjct 39549940 CGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTAC 39549999 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAG 14213 ||||||||||| || || || || || || ||||| || |||||| Sbjct 39550000 ATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAG 39550044 >seq14 Length=174509413 Score = 91.5 bits (100), Expect = 1e-13 Identities = 232/348 (67%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 || || ||||| ||||| || || | || ||||||| || | ||||||||| ||| Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985 || | ||| ||||| || || || ||||| | ||| ||||| ||| || || || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAG 142132968 Query 13986 AAGAATATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14044 ||||||||||| || || ||| ||||| || || | || ||| |||||||| | | Sbjct 142132967 AAGAATATTCCTTCGAC-GCAGGCAAAAGCAATGATCCGCTCTGCAAACGATTCGGATCC 142132909 Query 14045 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14104 | ||| |||||||| ||||| | | ||| || | || | || |||||||| Sbjct 142132908 G-TCG--ATCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAAT 142132852 Query 14105 AGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14164 || ||||| | | ||| || | | | | ||||| | || | | | || Sbjct 142132851 CGCGCGAAATAGACGATTCTTTTCAGTGGAATCTTTGATGTAGGATTCGAGTAACAGACT 142132792 Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212 ||||| || ||||| |||||||| || || || ||||| || || || Sbjct 142132791 GTACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAA 142132744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479718837195200