Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15 104 2e-17 seq14 96.9 3e-15 >seq15 Length=171247636 Score = 104 bits (114), Expect = 2e-17 Identities = 232/345 (67%), Gaps = 5/345 (1%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || || ||||| ||||| | ||||| |||| || | ||||| || || ||| Sbjct 39549703 AAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTT 39549762 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 13775 || || |||||||| || || || || ||||| || || ||| | || | | || ||||| Sbjct 39549763 AAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCA-CAAAAGCTACCAGAAAA 39549821 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||||||||| ||||| ||||| || |||| || ||| |||||||| || || Sbjct 39549822 GAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAACGATTCTGAACCGT- 39549880 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 ||||| || | ||||| | | ||||| | | | | ||||| || || || Sbjct 39549881 --CGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCTCAATAGC 39549938 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 | ||| ||| | | || || || | | ||||| | || | || || || || Sbjct 39549939 ACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTA 39549998 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 |||||||||||| || || || || || || ||||| || ||||| Sbjct 39549999 CATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAA 39550043 >seq14 Length=174509413 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 || || ||||| ||||| || || | || ||||||| || | ||||||||| ||| Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 || | ||| ||||| || || || ||||| | ||| ||||| ||| ||| ||| || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAG 142132968 Query 13774 AAGAATATTCCCTCAACTGCA-GCAAACGCTATTAGTCGTTCTCCAAACGAT 13824 ||||||||||| || || ||| ||||| || || | || ||| |||||||| Sbjct 142132967 AAGAATATTCCTTCGAC-GCAGGCAAAAGCAATGATCCGCTCTGCAAACGAT 142132917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478579658953920