Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq15 104 2e-17
seq14 96.9 3e-15
>seq15
Length=171247636
Score = 104 bits (114), Expect = 2e-17
Identities = 232/345 (67%), Gaps = 5/345 (1%)
Strand=Plus/Plus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| || || ||||| ||||| | ||||| |||| || | ||||| || || |||
Sbjct 39549703 AAGCAAGCGAAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTT 39549762
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 13775
|| || |||||||| || || || || ||||| || || ||| | || | | || |||||
Sbjct 39549763 AAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCA-CAAAAGCTACCAGAAAA 39549821
Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835
||||||||| ||||| ||||| || |||| || ||| |||||||| || ||
Sbjct 39549822 GAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAACGATTCTGAACCGT- 39549880
Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895
||||| || | ||||| | | ||||| | | | | ||||| || || ||
Sbjct 39549881 --CGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCTCAATAGC 39549938
Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955
| ||| ||| | | || || || | | ||||| | || | || || || ||
Sbjct 39549939 ACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTA 39549998
Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000
|||||||||||| || || || || || || ||||| || |||||
Sbjct 39549999 CATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAA 39550043
>seq14
Length=174509413
Score = 96.9 bits (106), Expect = 3e-15
Identities = 126/172 (73%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713
|| || ||||| ||||| || || | || ||||||| || | ||||||||| |||
Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028
Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773
|| | ||| ||||| || || || ||||| | ||| ||||| ||| ||| ||| ||
Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAG 142132968
Query 13774 AAGAATATTCCCTCAACTGCA-GCAAACGCTATTAGTCGTTCTCCAAACGAT 13824
||||||||||| || || ||| ||||| || || | || ||| ||||||||
Sbjct 142132967 AAGAATATTCCTTCGAC-GCAGGCAAAAGCAATGATCCGCTCTGCAAACGAT 142132917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478579658953920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |